Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1335 ATGTTAATGAAATCGGAGCATGTTGCCAATCAATTCAAGGTTTTGATTCGGGCGGTAGCCACTGCTCTTGACCTGCATCATATCGAGAGAGGAATCAAACCTGACTTGAGTACCATGAAGCGAATTTTGGACTACCTAGAAATCAAGAACTGGAATGATTGCAATAAAGAGATCAAATTCTTGGAAGCCGAAATTAGCTTTAGCTACTCTGGTGGTGACGAGAAGGAGACTTACAATCAAGCTTCCATTCAGAAATGGCTGAAAGCTGAACGTAGGATATGCCCTAAAACACGGGATAACCTCACAAACACTAATCTCATCCCAAACACAACCCTTATAAATCTAATCCAACAGTTCTGTGCTGACAATGGCATTTCCGCCGCCAAGTCAGATCACCTGAATCGCATCATAACGAGAACCATCATCCCTGGTAGTATCGCTTCAGCACATGCCATACGATTTCTTTCACGGTTCATTGCTCGGAGGCTCGTGTTTGGAACAAATAACCAGAAAAACAAAGCAGCTTAG 528 0.4299 MLMKSEHVANQFKVLIRAVATALDLHHIERGIKPDLSTMKRILDYLEIKNWNDCNKEIKFLEAEISFSYSGGDEKETYNQASIQKWLKAERRICPKTRDNLTNTNLIPNTTLINLIQQFCADNGISAAKSDHLNRIITRTIIPGSIASAHAIRFLSRFIARRLVFGTNNQKNKAA 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1335 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 128 IPR013083 -
Dere12g1335 175 PANTHER U BOX DOMAIN-CONTAINING 75 160 - -
Dere12g1335 175 Pfam U-box domain 77 123 IPR003613 GO:0004842|GO:0016567
Dere12g1335 175 SUPERFAMILY RING/U-box 76 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1335 Dere-ChrDere12 24673162 24674020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1335 34 175 U-box Gene Family AT3G54850 30.345 8.41e-13 63.5