Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1325 ATGGAAGACTTCTCCATCCAGTTGCAAATACCGAAGGCATTTGTGAAGACATTTGGAGAACTTCTGTCGAAGGACGTTCAACTTATGACTGGTTCTGATAACTTCTGGGAAGTTGGTGTGGCAAATGATGGAAATAAAGGTGTGTATTTCCGAAAGGGGTGGGAGGAGTATGTGAAGGATAACCTTTTGGAATATGGGGACTTTTTAGCTTTTGAATATGTGGGGAATTCAACATTCAAAGTGAAGATGTATGGTTCACATTGCTGTGAGAAGAAAGTTCAGATGGTTAGAGATGAAAACCCTACTGCTACTGCTGGTGAAGATGACAGTAAGAAACAAGCGAGTGAGAGTACTGATAATCAAGCAAAAAGGAAGAGAGCAGTAGCAGAAGATGAGGAAGATGCGATTCAGAATATGAAGTGTCAAAAGTCAATATCTTTGAAAAATCATACCCCAGAGGAAGGCTTCAAGGGCCCACCAGTAAATGAAGCTAAAAAAAGTAACGAAATCATTGACATTGACATTGATCCTCCTGTTGACAATGAAATTGAAGCTGGGAGATTCAAATCCATTTATCCTTACTTTCATATAGTTCTCCAGCATTCTTATGTCAATTCTTCAGCATTGGTTTCATCATTGTCTTCCATAGTAATGTTGCTTGAATGCCCTGGACAGTACTTGCCAACAAGGGTTTACAGGAAACATATGAAGGACAAGCAAAAAGATGTGAAACTTGAGGTTTCAGGAAGACTTTGGACTGTGAAATTGACTCACATTGGATATGGCAATTCCAATTATGGCAGACTCAATGAAGGTTGGCGAGCATTTTCAAGAGACAACAAGCTCAAGGTTGGAGATGTCTGTGTCTTTGAAATGAGAGAGAGCACAAATTTTCTGTTTAAAGTGCATATTTTCAGATGTAGTTGA 927 0.3927 MEDFSIQLQIPKAFVKTFGELLSKDVQLMTGSDNFWEVGVANDGNKGVYFRKGWEEYVKDNLLEYGDFLAFEYVGNSTFKVKMYGSHCCEKKVQMVRDENPTATAGEDDSKKQASESTDNQAKRKRAVAEDEEDAIQNMKCQKSISLKNHTPEEGFKGPPVNEAKKSNEIIDIDIDPPVDNEIEAGRFKSIYPYFHIVLQHSYVNSSALVSSLSSIVMLLECPGQYLPTRVYRKHMKDKQKDVKLEVSGRLWTVKLTHIGYGNSNYGRLNEGWRAFSRDNKLKVGDVCVFEMRESTNFLFKVHIFRCS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1325 308 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 306 IPR044837 -
Dere12g1325 308 Gene3D - 1 89 IPR015300 -
Dere12g1325 308 ProSiteProfiles B3 DNA-binding domain profile. 210 308 IPR003340 GO:0003677
Dere12g1325 308 Pfam B3 DNA binding domain 226 306 IPR003340 GO:0003677
Dere12g1325 308 Pfam B3 DNA binding domain 7 82 IPR003340 GO:0003677
Dere12g1325 308 SMART B3_2 209 308 IPR003340 GO:0003677
Dere12g1325 308 SMART B3_2 4 87 IPR003340 GO:0003677
Dere12g1325 308 CDD B3_DNA 226 306 IPR003340 GO:0003677
Dere12g1325 308 ProSiteProfiles B3 DNA-binding domain profile. 1 87 IPR003340 GO:0003677
Dere12g1325 308 SUPERFAMILY DNA-binding pseudobarrel domain 6 89 IPR015300 -
Dere12g1325 308 SUPERFAMILY DNA-binding pseudobarrel domain 193 307 IPR015300 -
Dere12g1325 308 CDD B3_DNA 4 84 IPR003340 GO:0003677
Dere12g1325 308 Coils Coil 122 142 - -
Dere12g1325 308 MobiDBLite consensus disorder prediction 101 135 - -
Dere12g1325 308 Gene3D - 180 308 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1325 Dere-ChrDere12 24565350 24567934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1325 7 308 B3 DNA Binding Superfamily AT3G18990 22.543 4.34e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere12g1325 B3 5.3e-14 CL0405