Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1324 ATGCTATTGCGTTGTGTTTCTGTGTTACAGCAAATACCAAAGGCATTTGTGACGAAATTTGGTGAACTTTTGTCAAAGAACATTCTACTTCAGACTGCTTCTGATAACTTCTGGAAAGTTGGTGTGGAAAATAATGCCAATGAAGGTGTGTATTTCCGAAAGGGGTGGGAGGAATTTGCGAAGTACAATCTTTTGGAACATGGGGACTTTGTGGTTTTTGAATATGTGGGGAATTCTACATTCAAAGTGAAGATGTATGGGTCACATTGCTGTGAGAAGAAAGTTCAGATGGTTAGAGATGAAAATCCTACTGCTACAGCTGGTGAAGATGACAGTAAGAAACAAGTGACTGAGAGAGTTCATAATCAAGAAAAAAGGAAGGGCGTAGTAGCAGATCTGGAAGATGCAATTCAGATGATGAAGCAGAAGCATCATAAGTCAAGATCTTTGACAGATCAGACCCCATGGGATGGCTTCAAGGTCTCACCAGTTAATGAGGTTAAAACTGAAAGTAACGAAAACATTAATTACATTGACTTAGATCCTCCCACTACTGACAATGAAATCGATGAGGGCAAATTAGGGTCCGTGAAGAAAGAAAGAAGCAATGAAGGTGTTAAAGAGGGGATTAATACTGCTAGTGATATTGCTCTTGAAGAAGCTAAGAGATTCAAATCGGATTATCCTTACTTTCATGTTGTTCTCCACCATTCTTATGTCAATTCTTCAGCACTGTACTTGCCAACATGGTTTTACAGGAAACATATGAAGGACAAGCAAAAAGAAGTAAAACTTGAGGTTTCAGGACGACTTTGGACTGTGGAATTAACTAACATTAATGGACATGGCAATTCCAATTATGCCAAACTCAGCGAAGGTTGGAGAGTATTTTCAATGGACAACAAGCTCAAGGTTGGAGATGTCAGTGTCTTTGAAATGAGAGAGAGCACAAATTTTCTGTTTAAAGTACATATTTTCAGATGTTGA 987 0.386 MLLRCVSVLQQIPKAFVTKFGELLSKNILLQTASDNFWKVGVENNANEGVYFRKGWEEFAKYNLLEHGDFVVFEYVGNSTFKVKMYGSHCCEKKVQMVRDENPTATAGEDDSKKQVTERVHNQEKRKGVVADLEDAIQMMKQKHHKSRSLTDQTPWDGFKVSPVNEVKTESNENINYIDLDPPTTDNEIDEGKLGSVKKERSNEGVKEGINTASDIALEEAKRFKSDYPYFHVVLHHSYVNSSALYLPTWFYRKHMKDKQKEVKLEVSGRLWTVELTNINGHGNSNYAKLSEGWRVFSMDNKLKVGDVSVFEMRESTNFLFKVHIFRC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1324 328 CDD B3_DNA 229 327 IPR003340 GO:0003677
Dere12g1324 328 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 327 IPR044837 -
Dere12g1324 328 Pfam B3 DNA binding domain 12 84 IPR003340 GO:0003677
Dere12g1324 328 Pfam B3 DNA binding domain 231 327 IPR003340 GO:0003677
Dere12g1324 328 ProSiteProfiles B3 DNA-binding domain profile. 1 89 IPR003340 GO:0003677
Dere12g1324 328 Gene3D - 5 91 IPR015300 -
Dere12g1324 328 CDD B3_DNA 12 86 IPR003340 GO:0003677
Dere12g1324 328 SUPERFAMILY DNA-binding pseudobarrel domain 226 327 IPR015300 -
Dere12g1324 328 SUPERFAMILY DNA-binding pseudobarrel domain 10 91 IPR015300 -
Dere12g1324 328 ProSiteProfiles B3 DNA-binding domain profile. 230 328 IPR003340 GO:0003677
Dere12g1324 328 Gene3D - 210 328 IPR015300 -
Dere12g1324 328 SMART B3_2 230 327 IPR003340 GO:0003677
Dere12g1324 328 SMART B3_2 5 89 IPR003340 GO:0003677
Dere12g1324 328 MobiDBLite consensus disorder prediction 103 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1324 Dere-ChrDere12 24558510 24560362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1324 11 327 B3 DNA Binding Superfamily AT3G18990 26.023 2.78e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere12g1324 B3 6.2e-15 CL0405