Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1323 ATGGAGGAACGCTTAGATCCAGTCGACGACCACCATGAGGGAGAGACAAAGGGGAGTCAAAGGAGAGAGAGAAAAGTTCCGGTGAAGCTGAGAGAGGCGAAGGAAGATAGGGAACACTTCAAATCTGGTTCAATGACCACGAAGAGAGACAGAGATGTTCTGATGAATAAACAAAGACAAAGGAGGGAGATGCAGAGGAGAAGAGAGGGAAGGACGATGGTCGACAGAAGGTCTGAGGACAAGGCGGAGGTAACGGTTGTTGGCAATGGCAAGGTGTATGTGGTGGTTTACATAGATGGTTATGATGAAGAAAAGAGATACGAGAATTTGAGAGAGGAAATGACAGAGTTACGGAAGATAACTGAAGTCCCTTCATTCGTCACGGTCTTAATGGAGGAAGACTTCCCCACCCAGTTGCAAATACCAATGGCATTTGTGATGAAATTTGGTGAACTTCTGACAACGAGCATTCTGCTTCAGACTGTTTCTGATTATAACTTCTGGGCAGTTGGTGTGGAGAATGCTAATGAAGGTGTGTATTTCCGAAGGGGGTGGGAGGAATTTGTGAAGGATAATCTTTTGGAATATGGGGACTTTCTGACTGTTAAATATGTGGGAGTTTCAACATTCAAAGTGAAGATGTATGGGTCACATTGCTGTGAGAAGAAAGTTCTAATTGTTAGATATCAAAACCCTACTGCTGCTGCTGCTGATGAAGATGACAGTATGAAAGAAGTGAATGAGAGAACTGGTACTCAAGAAAAAAGGAAGGAAGTAGTAGCAGATTTGGAAGATGCAATTCAGATGATGAAGCATGATGAGTCAATATCTTTGAATGATCAGATCCCATGGGATGGCTTCGAGGTCTCACCAGTTAATGAAAACATTAATTACATTGACTTAGATCCCCTTACTACTGACGATGAAATTGGTAAGCCTTCATCACGGTTTCAAGAACAATTCAATAAAGACAATGGGATTGATCAAGGTTTTGCAGATGAACGTGGTGAAGAGAGGAATATTGCTAGTGATATTGCTCTTGAAGAAGCTAAGAGATTCAAATCTGATTATCCTTACTTTCACGTTGTTCTCTACCCTTCTTATGTCCATTCTTATGCAGTGTACGTGCCAACAAGGTTTTACATGAAACATATGAAGGACAGGCAAAAATATGTAGGACTTGAGGTTTCAGGAAGACTTTGGATTGTGGAATTGACTATCATTACTGGACATACCAAACCCAATTATGCCAGACTCAGGGAAGGTTGGAGATCATTTTCATTGGACAACAATCTCAAGGTTGGAGATGTCTGTGTCTTTGAAATGAGAGACAGCACAAACCTTCTGTTTAGAGTACATATTTTCAGATGTTGA 1374 0.4134 MEERLDPVDDHHEGETKGSQRRERKVPVKLREAKEDREHFKSGSMTTKRDRDVLMNKQRQRREMQRRREGRTMVDRRSEDKAEVTVVGNGKVYVVVYIDGYDEEKRYENLREEMTELRKITEVPSFVTVLMEEDFPTQLQIPMAFVMKFGELLTTSILLQTVSDYNFWAVGVENANEGVYFRRGWEEFVKDNLLEYGDFLTVKYVGVSTFKVKMYGSHCCEKKVLIVRYQNPTAAAADEDDSMKEVNERTGTQEKRKEVVADLEDAIQMMKHDESISLNDQIPWDGFEVSPVNENINYIDLDPLTTDDEIGKPSSRFQEQFNKDNGIDQGFADERGEERNIASDIALEEAKRFKSDYPYFHVVLYPSYVHSYAVYVPTRFYMKHMKDRQKYVGLEVSGRLWIVELTIITGHTKPNYARLREGWRSFSLDNNLKVGDVCVFEMRDSTNLLFRVHIFRC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1323 457 Gene3D - 119 220 IPR015300 -
Dere12g1323 457 SUPERFAMILY DNA-binding pseudobarrel domain 353 456 IPR015300 -
Dere12g1323 457 Pfam B3 DNA binding domain 128 213 IPR003340 GO:0003677
Dere12g1323 457 Pfam B3 DNA binding domain 360 456 IPR003340 GO:0003677
Dere12g1323 457 Gene3D - 340 457 IPR015300 -
Dere12g1323 457 ProSiteProfiles B3 DNA-binding domain profile. 124 218 IPR003340 GO:0003677
Dere12g1323 457 MobiDBLite consensus disorder prediction 1 77 - -
Dere12g1323 457 ProSiteProfiles B3 DNA-binding domain profile. 359 457 IPR003340 GO:0003677
Dere12g1323 457 SMART B3_2 126 218 IPR003340 GO:0003677
Dere12g1323 457 SMART B3_2 360 456 IPR003340 GO:0003677
Dere12g1323 457 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 134 456 IPR044837 -
Dere12g1323 457 SUPERFAMILY DNA-binding pseudobarrel domain 122 220 IPR015300 -
Dere12g1323 457 CDD B3_DNA 358 456 IPR003340 GO:0003677
Dere12g1323 457 CDD B3_DNA 124 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1323 Dere-ChrDere12 24551693 24556905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1323 138 456 B3 DNA Binding Superfamily AT3G18990 25.356 1.66e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere12g1323 B3 5e-13 CL0405