Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1309 ATGCAGAATCACAGGCTGAAGCAGCAACAACAAGCTTTGATGCAACAAGCTCTTCTTCAACAACAGTCTCTCTACCATCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGTAACATACATACACAGGTAACTGAGCCACTTCTGCAAGAAGTTTTTGCTAGTACTGGCCCAGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCATATGGATTCATTCACTATTTTGATCGAAGGTCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACCTGTTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTTCAACATATTTGTTGGTGATCTCAGTCCTGAGGTCACTGATGCTACATTGTTTGCGTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGAGGGTTTGGTTTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCAATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTTCTAATGAAGACAAGCAAAACTCAGACACAAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACATCTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTCTATGTTGGCAATCTTGCTCCAGAGGTAACCCAGCTTGACCTCCATCGCCATTTCCATGCTCTTGGGGCTGGAATGATAGAGGAGGTTCGTGTCCAGCGTGACAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTATTCTCTGTGGAAAACCAATCAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCAGCTGCACCTCTGCCAGGCCTATCTGCGACTGATCTTTTGGCCTATGAGAGACAGCTAGCAATGAGCAAGATGGGTGGTGTACATGCCCTTATGCATCCCCAAGGACAGCATGCTCTTAAACAGGCAGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTCCAGAACGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA 1254 0.4601 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGMIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHALKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1309 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Dere12g1309 417 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Dere12g1309 417 CDD RRM2_PUB1 137 216 - -
Dere12g1309 417 Gene3D - 239 338 IPR012677 -
Dere12g1309 417 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
Dere12g1309 417 FunFam Oligouridylate-binding protein 1C 236 338 - -
Dere12g1309 417 SUPERFAMILY RNA-binding domain, RBD 51 217 IPR035979 GO:0003676
Dere12g1309 417 Gene3D - 137 238 IPR012677 -
Dere12g1309 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 337 - -
Dere12g1309 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 334 IPR000504 GO:0003723
Dere12g1309 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Dere12g1309 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 324 IPR000504 GO:0003723
Dere12g1309 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Dere12g1309 417 Gene3D - 1 136 IPR012677 -
Dere12g1309 417 CDD RRM1_PUB1 55 125 - -
Dere12g1309 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Dere12g1309 417 SMART rrm1_1 54 123 IPR000504 GO:0003723
Dere12g1309 417 SMART rrm1_1 139 212 IPR000504 GO:0003723
Dere12g1309 417 SMART rrm1_1 260 330 IPR000504 GO:0003723
Dere12g1309 417 MobiDBLite consensus disorder prediction 215 258 - -
Dere12g1309 417 SUPERFAMILY RNA-binding domain, RBD 249 341 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1309 Dere-ChrDere12 24408899 24414803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1309 48 334 Eukaryotic Initiation Factors Gene Family AT1G49760 29.043 3.28e-26 109