Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1304 ATGGCTAATTCTTCCTTCGACTTTGACTACTACTACTCCCCAACGCACAACTCACGACGCCACTACCCATCTCCCTCAAACTCTTGCAATGTCCCTCTTTCTTTCACAGCTTCCACCTCTCACACCAGTTCAAGAGTTCCTCCTCCCACACCTTTTGCATCAGACTATGATCATTCTTGGAAAGAAGAAATTTCATGGCAATTTGAGCCTAACGAGTGGCTTGACTATTCTAAAACCTTAGGCTCTGCTTTGAGCCCATGGGCTTCAAGCTCCTCCCCATCTGGTCTCGGTCAGGCATTTCGTCGAACAGCTAATGACTATTACCTTTCTCGAACTTGTGCGCCCAGGGGCCCCACCACAAACCCATATTGTGAACACTCAGGGCACGTCCCCTGTGGGAAAATTGAGCTTCGGAGCTACGCTGCTGCTACTGAATCTGATAATGAGTTCTCAAAATTGGGGATCATCAAATATGGGAATAGTGGAAATGGTAAGAATAGTCCATTGGCTGAGGAAGATGAGCCAAGTATGCTATGCTATAATAGTGAATTAGATCATGATCTTGAACTATTACACAGTAACAAAGATGATGGAAGTTATGGTGGGTATTGTAGTGAATATGAGATTCATGAAGAGAATAGAGAGGGTAGGAGGCCAGTGGGGGTGTTGGGGTTGTTCAAGTACTCAACGAAGTGGGATTGGGTGCTAGTGATGGTGGGATGCGTAGGGGCTCTCATAAATGGAGGATCATTGCCTTGGTATTCTTATCTTTTTGGGGATTTGGTCAATAAGATTGCTGCTGAATCATCCAGTGGTGACAAAACCCAGATGCTCAAGGACGTAGAACAGATTTGCATATTTATGATGGGGTTAGCTGCAGTGGTGCTAGTTGGAGCATATTTGGAGATCACATGTTGGAGGTTGGTGGGGGAGAGATCTGCTCAGAGAATAAGAAGTGAGTATTTAAGAGCAGTTCTCAGACAAGACATTGCCATGTTTGATAAAGAGATCAGCACTGGTGATATTATGCATGGAATTGCAAGTAATGTTGCACAAATTCAAGAAGTCATGGGAGAGAAGATGGCTCACTTCATTCATCATGTATTCACATTCATCTGTGGGTACACAGTCGGGTTTCTAAGGTCATGGAAAGTCTCTCTGGTGGTATTCTCAGTCACCCCACTGACTGTATTCTGTGGCATCCTTTATAAAGCTATTTATGGAGGTCTAACTGCAAAGGAGGAAGCTTCATATAGAAAAGCTGGAAGCATAGCAGAGCAGGCCTTCAGTTCAATCAGGACAGTGTTTTCTTTGGTTGCAGAAAGCCAAATGGGTTCAAAATACAGTGAAGTTCTGCAAAAATCAGTAAGATTTGGGGCAAAGATTGGGTTTGCTAAGGGTGGAGGCATGGGAGTAATCTATCTGGTAACCTACTCAACATGGGCCTTGGCTTTCTGGTATGGCTCTATCTTAATTGCCAGGAATGAGATTGATGGAGGTGCAGCCATTTCTTGTTTCTTTGCTGTCAATGTAGGGGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGCACTGTGGCTGCAAGTTGTGTATTTGAAATTATAGAGAGAATTCCAGAGATTGATCCGTACAGTCCTGAAGGGAGGAAGCTCTCCAATGTTGGTGGAAGGATTGAGTTCAAGAATGTGAGCTTTGCATACCCATCTCGTCCTGATGCTCTGATTCTTCATTCCTTTAGCTTACTGATTCCATCTGCAAGAACCCTAGCTTTGGTAGGTCCTAGTGGAGGAGGCAAGTCCACCATTTTTGCTCTCATAGAGAGGTTTTATGACCCTATTGAAGGGGTAATAACTTTGGATGGTCATGATTTGAGAAGCTTTCAAGTCAAATGGCTAAGAGATCAAATAGGAATGGTAGGACAGGAGCCAGTTCTCTTTGCCACAACAATACTGGAAAATGTGATGATGGGGAAGGAGAATGCCACCAAGAAAGAGGCGATTGATGCTTGCATTGCTGCTGATGCCCACAGCTTCATCTCCAGTTTACCACTAGGCTATGACACTCAGGTTGGAAACAGGGGAACCCAACTCTCAGGAGGTCAAAAGCAGCGAATTGCATTGGCTCGAGCCATGATCAAAGATCCTAAATTCCTTCTCTTAGATGAACCTACCAGTGCTCTTGATGCTGAGTCAGAGTCCATAGTCCAAAAGGCCATTGACAATACTTCTGCTGGCCGAACCACCATTGTCATTGCTCACAGGATAGCCACAGTAAGAAATGCTCACACCATTGTAGTTCTTGACAATGGTTCTGTCGCTGAGATTGGTGACCATCACCAGCTTATGAGAAATGCTGGCACATACTTTAACCTCATCAGGCTCGCTTCTGAACCCATTTCAAAACCTATGCCAAAAGAGTATGTCACACAAAAGGCTAATGACCTTTCCATTTGTGAGAAATCATTTCCTGATATCTCACAGTTTAACTCTAAGTACTTAAAAGTCATGCAAGAGGAAAAACAAGAAGATGTGGAAGATAAGCAAAAGAAAAAGCCAAGAAAGTTCAGACTTTCTGAAATATGGAAACTGCAAAAGCCAGAATTTGTCATGCTGTTGTTTGGATTCCTTCTGGGTATGCTTGCAGGTGCTTTCTTGTCCCTTTTTCCGCTGATTTTAGGCATAGCCCTTGAAGTATATTTCCATGAAGACACTTCAAAGATGGAAAGAGATGTCAGTCGCCTTTGTCTGGCACTTGTTGGGCTTGGTTTTGGATGCATAATCTCCATGACGGGACAACAAGGTCTGTGTGGCTGGGCTGGAACAAAGCTCACGTCAAGGGTTAGAGTCCTTCTGTTTCAAGCCATACTAAAACAAGAACCAGGGTGGTTTGATTTTGAGGAAAACTCCACTGGAGTATTAGTGACAAGGCTATCAATTGACTGTGTTAGCTTTCGTTCAGTACTTGGTGATAGATTTTCAGTCCTTTTAATGGGGTTGAGTTCAGCTGCTGTAGGGTTTGGTGTGTCCTTTTTTCTCGAATGGAGATTAACCCTTTTAGCTGCTGCTTTAACCCCTTTCACTCTTGGTGCTAGCTACTTAAGCTTGATCATAAACATAGGGCCAGGAGTTGATAACAATTCTTATGCTAGAGCTAGTAATATTGCTTCTGGTGCAGTTTCAAACATAAGGACAGTCATTACTTTTTCTGCCCAAGAACAAATAGTAAAGTCTTTTGAGCAAGCCTTGTTAGAGCCTAGGAAAAAATCAGTAAAAAAGTCACAAATTCTAGGCCTGACACTTGGGTTTTTTCAAGTAGCTATGTATGGAGCGTACACATTAATTCTTTGGTTCGGTGCCTACCTTGTAAAACAGAACAAAACTGAATTCGGAGATGTTTATAAGATCTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTGGGACAACTAGCAGGTTTAGCACCAGATACTTCCATGGCAACAACAGCAATTCCTGCAGTTCTAGATATCATAAATCGTAGGCCATTGATAGGCAACGATAGAACAAAGGGGAGGAAGATAGATAGATCAGAATCAAAACCATTGGAGATAGAGTTCAAAACGGTGACATTTGCTTACCCATCTAGGCCTCAAGTGATTGTGTTGAAAGATTTCTGTTTGAAGGTGAAAGGAGGAAGCACAGTGGCCTTAGTGGGGGCAAGTGGGTCAGGAAAATCTACAGTGATATGGATGATACAGAGGTTCTATGATCCAAATGAAGGGAAAGTGACGCTTGGTGGGTTGGATTTGAGGAAGATTGATGTGAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGCTCAAGAGCCTGCACTATTTGCTGGGAGTATAAGAGAGAATATTGCCTTTGGGGATCAAGATGCATCATGGGCTGAAATTGAAGAGGCTGCAAGAAAAGCTTACATTCACAACTTCATAAGTTGCCTTCCTCAAGGATATGAAACCCAGGTGGGTGAAAGTGGGGTCCAGCTATCCGGTGGTCAAAAGCAAAGAATTGCAATAGCAAGAGCCATACTGAAGAAATCAAGAGTGCTATTGCTTGATGAAGCAAGCAGTGCTTTGGACATGGAATCAGAGAAACATGTCCAGAATGCACTTAGAAATGTCACAAAAGAGACAACCACCATAGTAGTAGCTCATCGTCTATCTACAATCACAGAGGCTAACAAAATCGCAGTAATGAAAAATGGGACAGTGGTGGAGTATGGAAGCCATGAGTCTCTCTTGGCTTCTCATGTTCATGGCTTGTATGCTAGCATGGTTCTTGCCCAGACTCAGGCCAATGCCTTCTCTTCTGGATCATAG 4353 0.433 MANSSFDFDYYYSPTHNSRRHYPSPSNSCNVPLSFTASTSHTSSRVPPPTPFASDYDHSWKEEISWQFEPNEWLDYSKTLGSALSPWASSSSPSGLGQAFRRTANDYYLSRTCAPRGPTTNPYCEHSGHVPCGKIELRSYAAATESDNEFSKLGIIKYGNSGNGKNSPLAEEDEPSMLCYNSELDHDLELLHSNKDDGSYGGYCSEYEIHEENREGRRPVGVLGLFKYSTKWDWVLVMVGCVGALINGGSLPWYSYLFGDLVNKIAAESSSGDKTQMLKDVEQICIFMMGLAAVVLVGAYLEITCWRLVGERSAQRIRSEYLRAVLRQDIAMFDKEISTGDIMHGIASNVAQIQEVMGEKMAHFIHHVFTFICGYTVGFLRSWKVSLVVFSVTPLTVFCGILYKAIYGGLTAKEEASYRKAGSIAEQAFSSIRTVFSLVAESQMGSKYSEVLQKSVRFGAKIGFAKGGGMGVIYLVTYSTWALAFWYGSILIARNEIDGGAAISCFFAVNVGGRGLALALSYFAQFAQGTVAASCVFEIIERIPEIDPYSPEGRKLSNVGGRIEFKNVSFAYPSRPDALILHSFSLLIPSARTLALVGPSGGGKSTIFALIERFYDPIEGVITLDGHDLRSFQVKWLRDQIGMVGQEPVLFATTILENVMMGKENATKKEAIDACIAADAHSFISSLPLGYDTQVGNRGTQLSGGQKQRIALARAMIKDPKFLLLDEPTSALDAESESIVQKAIDNTSAGRTTIVIAHRIATVRNAHTIVVLDNGSVAEIGDHHQLMRNAGTYFNLIRLASEPISKPMPKEYVTQKANDLSICEKSFPDISQFNSKYLKVMQEEKQEDVEDKQKKKPRKFRLSEIWKLQKPEFVMLLFGFLLGMLAGAFLSLFPLILGIALEVYFHEDTSKMERDVSRLCLALVGLGFGCIISMTGQQGLCGWAGTKLTSRVRVLLFQAILKQEPGWFDFEENSTGVLVTRLSIDCVSFRSVLGDRFSVLLMGLSSAAVGFGVSFFLEWRLTLLAAALTPFTLGASYLSLIINIGPGVDNNSYARASNIASGAVSNIRTVITFSAQEQIVKSFEQALLEPRKKSVKKSQILGLTLGFFQVAMYGAYTLILWFGAYLVKQNKTEFGDVYKIFLILVLSSFSVGQLAGLAPDTSMATTAIPAVLDIINRRPLIGNDRTKGRKIDRSESKPLEIEFKTVTFAYPSRPQVIVLKDFCLKVKGGSTVALVGASGSGKSTVIWMIQRFYDPNEGKVTLGGLDLRKIDVKWLRRQMALVAQEPALFAGSIRENIAFGDQDASWAEIEEAARKAYIHNFISCLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDMESEKHVQNALRNVTKETTTIVVAHRLSTITEANKIAVMKNGTVVEYGSHESLLASHVHGLYASMVLAQTQANAFSSGS 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1304 1450 Pfam ABC transporter transmembrane region 876 1147 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1304 1450 Pfam ABC transporter transmembrane region 238 511 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1304 1450 CDD ABC_6TM_Pgp_ABCB1_D1_like 239 534 - -
Dere12g1304 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 239 528 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1304 1450 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1050 1190 - -
Dere12g1304 1450 FunFam ABC transporter B family member 4 553 806 - -
Dere12g1304 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 877 1163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1304 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1198 1440 IPR027417 -
Dere12g1304 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1201 1437 IPR003439 GO:0005524
Dere12g1304 1450 Pfam ABC transporter 1219 1367 IPR003439 GO:0005524
Dere12g1304 1450 CDD ABC_6TM_Pgp_ABCB1_D2_like 886 1181 - -
Dere12g1304 1450 ProSitePatterns ABC transporters family signature. 1340 1354 IPR017871 GO:0005524|GO:0016887
Dere12g1304 1450 PANTHER ABC TRANSPORTER B FAMILY 210 799 IPR039421 -
Dere12g1304 1450 Gene3D - 561 821 IPR027417 -
Dere12g1304 1450 Gene3D - 1199 1444 IPR027417 -
Dere12g1304 1450 FunFam ABC transporter B family member 1 1191 1441 - -
Dere12g1304 1450 Gene3D ABC transporter type 1, transmembrane domain 1050 1195 IPR036640 GO:0005524|GO:0016020
Dere12g1304 1450 SMART AAA_5 590 776 IPR003593 GO:0016887
Dere12g1304 1450 SMART AAA_5 1228 1414 IPR003593 GO:0016887
Dere12g1304 1450 Gene3D ABC transporter type 1, transmembrane domain 286 1040 IPR036640 GO:0005524|GO:0016020
Dere12g1304 1450 SUPERFAMILY ABC transporter transmembrane region 865 1179 IPR036640 GO:0005524|GO:0016020
Dere12g1304 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 798 IPR027417 -
Dere12g1304 1450 SUPERFAMILY ABC transporter transmembrane region 225 548 IPR036640 GO:0005524|GO:0016020
Dere12g1304 1450 Pfam ABC transporter 582 730 IPR003439 GO:0005524
Dere12g1304 1450 CDD ABC_MTABC3_MDL1_MDL2 563 800 - -
Dere12g1304 1450 ProSitePatterns ABC transporters family signature. 702 716 IPR017871 GO:0005524|GO:0016887
Dere12g1304 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 563 799 IPR003439 GO:0005524
Dere12g1304 1450 CDD ABC_MTABC3_MDL1_MDL2 1201 1440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1304 Dere-ChrDere12 24344828 24353555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1304 209 1450 Calmodulin-binding Proteins AT2G36910 40.300 0.0 940