Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1298 ATGGCGAGTAGAGAAGAGAAAGGCAGTGACTTCTACGCGGTTATGGGGTTGAATAAGGAGTGCACAGAATCAGAGCTCAGGAATGCCTATAAAAAACTCGCAATGAAATGGCACCCAGATCGTTGTTCAGCGTCGGGCAATTCAAAGTTCGTGGAAGAAGCGAAGAAGAAATTCCAGGCAATTCAGCAAGCATATTCTGTTTTATCTGACGCGAACAAAAGGTTCTTGTATGACATGGGAGTCTATGATAGCGATGATGACGACAACAATGGAATGAGTGAATTTCTGAACGAAATGGCAGCAATGATGAGCCAAACAAAACCAAATGAAAATGGGGAGGAGAGCTTTGAGGAGTTGCAACAGCTGTTTGAAGATATGTTTCAAGCGGACTTTGGAAGTGACTCCCACACTGCTGCTGCTGCTTGTTCTACTTCATCTACCTACGTGACTTTCTCTGAGACTTCTGGTTCGAATAAACGTAATTCCTCAGAGATGAATATCGGGAAGGCAGTGGATTCTTCCGACTTCGATGCCAGCTTACAGAACTTCTGTTTAGGGGTTAGTATACACCCTTTTCCAGTTTTCAATTTGACACTACATGATTCATGGTATACATCAATGAACAGGGAAAAAGAAGTTAGAAAATGCATGGAAGTTTTCAATTTAAAATCCCAGTCACCAAACACTAGATGCTTCAGATTACATGGTCATGCCTTAACATCCTTTTTTGTAGGTAGTTAA 741 0.417 MASREEKGSDFYAVMGLNKECTESELRNAYKKLAMKWHPDRCSASGNSKFVEEAKKKFQAIQQAYSVLSDANKRFLYDMGVYDSDDDDNNGMSEFLNEMAAMMSQTKPNENGEESFEELQQLFEDMFQADFGSDSHTAAAACSTSSTYVTFSETSGSNKRNSSEMNIGKAVDSSDFDASLQNFCLGVSIHPFPVFNLTLHDSWYTSMNREKEVRKCMEVFNLKSQSPNTRCFRLHGHALTSFFVGS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1298 246 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Dere12g1298 246 CDD DnaJ 10 70 IPR001623 -
Dere12g1298 246 Pfam DnaJ domain 10 78 IPR001623 -
Dere12g1298 246 PANTHER PUTATIVE, EXPRESSED-RELATED 2 175 - -
Dere12g1298 246 PRINTS DnaJ domain signature 12 30 IPR001623 -
Dere12g1298 246 PRINTS DnaJ domain signature 30 45 IPR001623 -
Dere12g1298 246 PRINTS DnaJ domain signature 53 73 IPR001623 -
Dere12g1298 246 SMART dnaj_3 9 73 IPR001623 -
Dere12g1298 246 Gene3D DnaJ domain 7 140 IPR036869 -
Dere12g1298 246 SUPERFAMILY Chaperone J-domain 7 81 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1298 Dere-ChrDere12 24295714 24298414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1298 2 78 C2H2 Transcription Factor Family AT1G74250 42.308 5.04e-10 57.4