Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1277 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCGGCGGCCGTGACCGGGAGGTCTCGTCGGCTCACCGCTGATTATCTCTGGCCAGATTTGAAGAAGCTCGGGTCGGGCAGGAGGTTCTCCAAGCCACTGAAGCCTGAATTTGTCATCGACTTGGACGACGATTTTGAAGCTGATTTTCGGGAATTCAAGGATGATTCTGATATCGATGAGGACGAGGACGATGATTTGATGATGGATGTCAAGCCCTTTGCTTTCTCCGCCACTAAGCCCTCCAAGAAGCCCCTGACTCGTGGATCTACAACTGTAAAATCTGAGGAATCCAATGGGCAAGCTGAGAAGTCTGGGAAGAGGAGGAAGAATCAATATAGGGGAATCCGCCAGCGCCCATGGGGTAAATGGGCAGCTGAGATCCGTGACCCGAGAAAGGGAGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATACTGAGGCACGGAGGATCCGCGGCAAGAAAGCCAAGGTGAACTTCCCTGATGAGGTCTCTGGAACCTCCCCGAAGCGTCTCAAGGCCAATATTGAAAAACAGCTTCCAAAGGCAAATCTGAGCTCTGCTCAACCCAATGTGACCCAGAACTTCAATGTTGGAACTGATCTGGATGACTACTACTACTCCATGGGTCTGATGGAACAGAAACCACAGATTAACCAGTATGCTGCTGCTAACATGGGATCCTTCCCCGAGAGCAATGATGGGCGCCCATCACTTTCACCAGCTGATGATGTCACCGTTTATTTCAGTTCTGACCAGGCAAGCAACTCATATGAGTATTCTGATCTCGGATGGGGCGAGCAGGGCCCGAAGACTCCAGAAATCTCATCCATGCTTTCTGGTGAATCTCAGCATGTGCAAGATGCCAACCAGAACAACATGCAATTCCCCAATTCTCAGAATGTGGTATCTGTGGAAAATGATTCCTCAAAGACACTATCCGAGGAGCTCGCTGATATCGAATCCCAGCTGAAGTTCTTTCAGACACCTTATCTTGAGGGGAGCTGGGATGATGCTTCACTTGGAACCCTGCTCAGTGGAGACACAACCCAGGATGCTGCCAACCCAATGAGCCTTTGGACCTTTGATGACCTTCCTCCTTCCCTGATGGGGGGACTACAAGAATGGTTTGTCACCTGTGTCGGAGATGGAGTGAAAAAGTAA 1224 0.5025 MCGGAIISDFIPAAAAVTGRSRRLTADYLWPDLKKLGSGRRFSKPLKPEFVIDLDDDFEADFREFKDDSDIDEDEDDDLMMDVKPFAFSATKPSKKPLTRGSTTVKSEESNGQAEKSGKRRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDTEARRIRGKKAKVNFPDEVSGTSPKRLKANIEKQLPKANLSSAQPNVTQNFNVGTDLDDYYYSMGLMEQKPQINQYAAANMGSFPESNDGRPSLSPADDVTVYFSSDQASNSYEYSDLGWGEQGPKTPEISSMLSGESQHVQDANQNNMQFPNSQNVVSVENDSSKTLSEELADIESQLKFFQTPYLEGSWDDASLGTLLSGDTTQDAANPMSLWTFDDLPPSLMGGLQEWFVTCVGDGVKK 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1277 407 MobiDBLite consensus disorder prediction 95 111 - -
Dere12g1277 407 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Dere12g1277 407 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Dere12g1277 407 MobiDBLite consensus disorder prediction 91 128 - -
Dere12g1277 407 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Dere12g1277 407 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Dere12g1277 407 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Dere12g1277 407 MobiDBLite consensus disorder prediction 280 305 - -
Dere12g1277 407 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Dere12g1277 407 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Dere12g1277 407 PANTHER DNA-BINDING DOMAIN 96 327 IPR044808 GO:0003700|GO:0009873
Dere12g1277 407 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Dere12g1277 407 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1277 Dere-ChrDere12 23916919 23919496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1277 1 393 AP2-EREBP Transcription Factor Family AT1G53910 45.631 2.03e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g1277 AP2 7.2e-12 CL0081