Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1274 ATGCAGGGAGCATCATCGTCATCTAATGCTTCTACCAATGATCTCTTCGTTGATGAATTCTACTTCTCAGCCCTATACGATGAAGAAGATATTTTTCCAATCTCCGATGAGAAATACGCAGAACAGATCCAGCTTCAAGAGGCCCTTATGTCCTCATCTATCATGTCCACCACATTAGGAAACGAGGAAACTAATGAGGTTCTCATTATCGAAGAGTCTAGAGGTAAAAAAAAGAAGGAAGAGACTAGTGAGTCTACTGGAAGCTTCTGTAAGATTTGCATGGAAGCTAAACCCACGGAAGACATGATCAGAAACAACAAAAGGTGCACGCACTTGTTCTGTTCAGATTGCATGTCGTCCTACTTGGCTGCGAAGATTCAAGAGAACATATCAACGGTGAAATGCCCCCACCCGAATTGCAGGGCCGTGTTAGAGCCTTCGTTTTGCCGATCCATCGTCCCAGTTGAGGTGTTTGGGCGGTGGGAAAATGCGCTTTGCGAGAATCTCATTCTAGGGTCCCAGAAATTTTACTGTCCCTTTAAGGATTGCTCGGCGATGTTGGTGGATGATGGGGACGAGGTTGTGACGTCCTCGGAGTGTCCAACCTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGGTTTCGTGGCACGCAGGGATGGAGTGCCGAGAGTTTCAGAGGGAGAAAGAGGGAGGGAGAGAGAAGGACGACGATGTGTTGCTGATGGAGCTTGCGAAGAACGAGAGATGGAGGAGATGCCCTCGAAGCAAATTCTATGTGGAGAAGGTTGACGGATGCCTTCATATTTCTTGCAGGTGTGGCTATGACTTCTGCTATGGATGCGGTTCCGATTGGGATCAACACCATGGGTGTCCTGTTCGTTGA 882 0.4807 MQGASSSSNASTNDLFVDEFYFSALYDEEDIFPISDEKYAEQIQLQEALMSSSIMSTTLGNEETNEVLIIEESRGKKKKEETSESTGSFCKICMEAKPTEDMIRNNKRCTHLFCSDCMSSYLAAKIQENISTVKCPHPNCRAVLEPSFCRSIVPVEVFGRWENALCENLILGSQKFYCPFKDCSAMLVDDGDEVVTSSECPTCRRLFCAQCKVSWHAGMECREFQREKEGGREKDDDVLLMELAKNERWRRCPRSKFYVEKVDGCLHISCRCGYDFCYGCGSDWDQHHGCPVR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1274 293 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Dere12g1274 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 173 IPR013083 -
Dere12g1274 293 SUPERFAMILY RING/U-box 168 227 - -
Dere12g1274 293 ProSiteProfiles Zinc finger RING-type profile. 90 136 IPR001841 -
Dere12g1274 293 Pfam IBR domain, a half RING-finger domain 243 290 IPR002867 GO:0008270
Dere12g1274 293 Pfam IBR domain, a half RING-finger domain 162 221 IPR002867 GO:0008270
Dere12g1274 293 SUPERFAMILY RING/U-box 88 168 - -
Dere12g1274 293 SMART ibrneu5 233 290 IPR002867 GO:0008270
Dere12g1274 293 SMART ibrneu5 159 221 IPR002867 GO:0008270
Dere12g1274 293 CDD BRcat_RBR_unk 172 224 - -
Dere12g1274 293 SUPERFAMILY RING/U-box 234 290 - -
Dere12g1274 293 CDD Rcat_RBR_unk 248 284 - -
Dere12g1274 293 Gene3D - 219 293 - -
Dere12g1274 293 FunFam RBR-type E3 ubiquitin transferase 85 172 - -
Dere12g1274 293 ProSiteProfiles TRIAD supradomain profile. 86 293 IPR044066 -
Dere12g1274 293 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 284 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1274 Dere-ChrDere12 23873507 23874679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1274 109 282 C3H Transcription Factor Family AT2G19610 29.189 2.08e-18 82.8