Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1266 ATGGATTCTATCAACTCCTTCAAGGGGTACGGTAAGGTAGATGAGCTCGAACAGAAATCCTATCGAAAGAAGACACGTAAGCGTGTGATCATCCTCGTCGTCTCCTCCATAATCCTAGCGGCAATCATCATCGCCGCCGTTGCAGGAACCGTCATTCACAAGCGTAACACTTCGTCCTCTGCCGATAACTCGGCAACCTCAACTGAGTTAACTCCGGCCGCGTCACTCAAGGCGGTCTGCAACGTGACTCAGTACCCCAACTCGTGCATCTCCAGCATATCCTCCCTCCCCAACTACTCCAACACCACCGACCCTGAACTCCTCTTCAAGCTCTCTCTCCGCGTCGCTATTGACGAGCTCTCGAATCTCGCGAAGCTTCCTTCGAAGCTCAGAGCCAATGTTAGGGACCCCACGGAACAGAAGGCCATCGACGTCTGCGGAGTTGTTTTTGACGATGCGGTGGACCGGCTCAACGACTCGGTTTCGTCTCTGGAAGCCGGCGGCGGTGGAGGAGGGAAGATTCTGTCACGGGCGAAGATCAACGACCTTAAGACGTGGCTCAGCGCGACGATTACGGACCAGGAGACTTGCTTGGACGCTATTGAGGAGTTGAATTCCACCACTGCGAAGGAGATTCTTCTGGAGCTGAGAACGGCCATGAGGAACTCTACCGAGTTTACGAGTAACAGCTTGGCCATTGTGACGAAGATTATAGGTCTGCTTGCGAACTTCAACCTCCCGATCCATAGGAGGCTACTCGGGTCGGGTTTCCCGAACTGGGTTGGCCCGGCTGAGCGGAGACTATTGCAGCAGGAGACGAACAAAACAACGCCTAATGCGGTGGTGGCGAAGGACGGAACCGGTCAATACAAGACGATCAGTGAGGCTCTGGCGGCGGTGAAGAAGAAGAGTGAGACTAGATTCGTGATTTACGTGAAGGAAGGTGTTTATGAAGAAAAGATAGATTTGGATAAGAACACTTGGAATGTGATGATTGTGGGAGATGGTAGAAACAAAACCATAGTCTCCGGCGACCTGAACAAGATCGACGGCACTCCCACTTTTGAGACTGCTTCTTTTGCTGTAAAGGGGAAGGGATTCATAGCCAGAGACATAGGCTTCAGGAACACTGCAGGTCCATCCAAACACCAAGCTGTGGCTATGAGATCTGGCTCAGACCACTCTGTGTTCTACAGGTGCTCCTTTGAAGGCTTCCAGGACACTCTCTATGCCCACTCCAACCGTCAGTTCTATCGTGACTGTGACATTACAGGAACCGTAGACTTCATCTTTGGCAATGCTGCTGCAGTGTTGCAGAACTGCAATATCAAGCCCAGGCAGCCTCTGTCAAACCAGTTCAACACTATCACTGCTCAGGGCAAGACCGACCCAAGCCAGAACACCGGGATTATAATCCAGAAGTCTGTGATTTCTGCACTAGATAATCTTACTGCTCTCACATACCTTGGAAGGCCTTGGAAAAACTACTCCACTAGTGTGATAATGCAATCTGACATAGGGTCCTTCTTGAACCCAATGGGCTGGATAGAATGGATCCCCAATGTGGAGCCTCCAAGCACTATTTTTTATGCTGAGTACCAGAATACTGGGCCGGGTTCAAACGTAACCCAGAGAATTAAATGGGCCGGGTACAAGCCCAGCCTCACAGAAGATGAGGCAAGGAAGTTCACGGTTCAGTCATTTATCCAAGGTAGTGAGTGGTTGCCTGATACTGCTGTGGATTTTCAATCCACTTTGTAA 1761 0.5077 MDSINSFKGYGKVDELEQKSYRKKTRKRVIILVVSSIILAAIIIAAVAGTVIHKRNTSSSADNSATSTELTPAASLKAVCNVTQYPNSCISSISSLPNYSNTTDPELLFKLSLRVAIDELSNLAKLPSKLRANVRDPTEQKAIDVCGVVFDDAVDRLNDSVSSLEAGGGGGGKILSRAKINDLKTWLSATITDQETCLDAIEELNSTTAKEILLELRTAMRNSTEFTSNSLAIVTKIIGLLANFNLPIHRRLLGSGFPNWVGPAERRLLQQETNKTTPNAVVAKDGTGQYKTISEALAAVKKKSETRFVIYVKEGVYEEKIDLDKNTWNVMIVGDGRNKTIVSGDLNKIDGTPTFETASFAVKGKGFIARDIGFRNTAGPSKHQAVAMRSGSDHSVFYRCSFEGFQDTLYAHSNRQFYRDCDITGTVDFIFGNAAAVLQNCNIKPRQPLSNQFNTITAQGKTDPSQNTGIIIQKSVISALDNLTALTYLGRPWKNYSTSVIMQSDIGSFLNPMGWIEWIPNVEPPSTIFYAEYQNTGPGSNVTQRIKWAGYKPSLTEDEARKFTVQSFIQGSEWLPDTAVDFQSTL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1266 586 CDD PMEI-like_3 78 237 - -
Dere12g1266 586 SMART PMEI_2 71 233 IPR006501 GO:0004857
Dere12g1266 586 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Dere12g1266 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 238 IPR035513 -
Dere12g1266 586 Pfam Pectinesterase 279 571 IPR000070 GO:0030599|GO:0042545
Dere12g1266 586 PANTHER PECTINESTERASE 38 576 - -
Dere12g1266 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 238 IPR035513 -
Dere12g1266 586 FunFam Pectinesterase 273 586 - -
Dere12g1266 586 FunFam Pectinesterase 72 238 - -
Dere12g1266 586 Gene3D - 273 586 IPR012334 -
Dere12g1266 586 SUPERFAMILY Pectin lyase-like 277 584 IPR011050 -
Dere12g1266 586 Pfam Plant invertase/pectin methylesterase inhibitor 76 233 IPR006501 GO:0004857
Dere12g1266 586 NCBIfam pectinesterase inhibitor domain 66 236 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1266 Dere-ChrDere12 23765644 23768808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1266 1 580 Carbohydrate Esterase AT1G53840 57.432 0.0 668