Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1265 ATGAAGTCCAATCTACCAGGTCCCTTTTATGCTCCTTGTTACATCTTCAATCCTCCAAATCCAAATAGTCTCTCTTTTTCTGTCTCTTCCTTCTCTCTTTGGTCAAACACAAATCACCTATATATGAGCAAGTTAAAACAACTTTTCGCCGGAATATCCAATTCCGGCAATCACATTCTCATGTCGAAGAACAACAAGAAGCTCTTCCTCTTCGCTCTCCTCACTACTCTGCTCCTTGTCTCGGCCATCGTCGGCATTGTCGCCGGAGTTAGCTCCCGCAAAATCTCCGACATGGACAATGTCCGTTCCACCCCATCACACGCTGTAGTCAAAACTGCTTGTAGCTCCACATTGTACCCCGATCTGTGCTTCTCCGCCATAGCCGCCGAACCCAGCTTCACCGAGAAAGTCTCCACCTACAAAGACGTTGTAGAATTGTCTCTAAACATAACCATCAGAGCCGTGCTACACAACTACTTCGCCGTCAAGAAGCTCCAAGCCAAGATAGGCCTAACAAAGAGAGAGAGCACCGCTCTTCATGATTGCTTGGAAACCATTGACGACACCCTGGACGAGCTTCGAGGTGCCATCGCCGATATCAAGGACTCCGCTCATCACGCCGACGACCTCAAGACTCTCGTCAGCGCCGCCATAACCAACCAAGAGACCTGCCTAGACGGATTCTCCCACGACGACGCTGATAAACACGTGAGGGAAGGGCTGAAGGACGGGTTCATGCACGTGGAACGCATGTGCAGCAACGCGCTGGCGATGATTAAGAACATCACTGATACAGAAGCGTCCATCAGTAACAGAAAAATGATGGAAGTGAAGGAGGAGGGGGATGGGATTAGGTGGCCGGAGTGGATGTCGGCTACGGACAGGAGGCTTTTGCAGGCGTCGACGGTTACTCCAAATGTGGTGGTGGCAGCTGACGGGAGCGGGAACTTCAAGACAGTGTCGGAGGCGGTGGCTGCAGCGCCGGAGCAGAGGAAGACGAGGTATGTGATAAGAATAAAAGCAGGGGTGTATAGAGAGAACGTGGAGGTGCCGAAGAAGAAGACGAATATTATGTTTGTGGGAGATGGAAGAACCAACACTATCATCACAGGAAGCAGAAATGTCGTTGATGGAAGCACAACCTTTCACTCTGCAACTGTCGCCGTAGTGGGAGAACGATTCTTGGCTCGAGACATAACCTTCCAAAACACTGCGGGTCCATCGAAACACCAAGCCGTGGCTCTGAGAGTCGGAGCCGACCTCTCGGCCTTCTACAGGTGCGACATGCTTGCCTATCAGGACACGCTCTACGTCCACAGCAACCGCCAGTTCTTCGTCGGCTGCCTCATAGCAGGCACCGTCGACTTTATCTTCGGCAACTCCGCCGTCGTCTTACAAGACTGCGACATCCACGCCCGGCGCCCCGGGTCCGGCCAGAAGAACATGGTCACCGCACAAGGAAGAGTCGACCCTAACCAGAACACCGGCATCGTCATCCAGAATTGCAGGATCGGTGCCACCCAGGATCTGGAGGGAGTGAAGGCAAGCTTCCCAACATACCTTGGGAGGCCATGGAAGGAGTACTCTAGGACTGTGATTATGAAAACTTCCATAAGCGACGTGATAAACCCGGAAGGGTGGTTTCCTTGGGAAGGGAATTTCGCATTGAACACTTTGTTCTATGGAGAGTATCAGAACTCTGGACCTGGTGCTCATACTTCTAGAAGGGTTAACTGGAGAGGCTTTAAGGTTATTACCAGTGCAACTGAGGCTCAAACTTATACTCCTGGTAGCTTCATTGCTGGTTCTAGCTGGTTGTCCTCTACTGGGTTTCCTTTTACTCTTGGGATGTAA 1854 0.514 MKSNLPGPFYAPCYIFNPPNPNSLSFSVSSFSLWSNTNHLYMSKLKQLFAGISNSGNHILMSKNNKKLFLFALLTTLLLVSAIVGIVAGVSSRKISDMDNVRSTPSHAVVKTACSSTLYPDLCFSAIAAEPSFTEKVSTYKDVVELSLNITIRAVLHNYFAVKKLQAKIGLTKRESTALHDCLETIDDTLDELRGAIADIKDSAHHADDLKTLVSAAITNQETCLDGFSHDDADKHVREGLKDGFMHVERMCSNALAMIKNITDTEASISNRKMMEVKEEGDGIRWPEWMSATDRRLLQASTVTPNVVVAADGSGNFKTVSEAVAAAPEQRKTRYVIRIKAGVYRENVEVPKKKTNIMFVGDGRTNTIITGSRNVVDGSTTFHSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYRCDMLAYQDTLYVHSNRQFFVGCLIAGTVDFIFGNSAVVLQDCDIHARRPGSGQKNMVTAQGRVDPNQNTGIVIQNCRIGATQDLEGVKASFPTYLGRPWKEYSRTVIMKTSISDVINPEGWFPWEGNFALNTLFYGEYQNSGPGAHTSRRVNWRGFKVITSATEAQTYTPGSFIAGSSWLSSTGFPFTLGM 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1265 617 PANTHER PECTINESTERASE 80 607 - -
Dere12g1265 617 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 109 263 IPR035513 -
Dere12g1265 617 ProSitePatterns Pectinesterase signature 2. 450 459 IPR033131 -
Dere12g1265 617 Pfam Plant invertase/pectin methylesterase inhibitor 109 258 IPR006501 GO:0004857
Dere12g1265 617 NCBIfam pectinesterase inhibitor domain 79 262 IPR006501 GO:0004857
Dere12g1265 617 SUPERFAMILY Pectin lyase-like 301 616 IPR011050 -
Dere12g1265 617 CDD PMEI-like_3 112 263 - -
Dere12g1265 617 SMART PMEI_2 105 258 IPR006501 GO:0004857
Dere12g1265 617 FunFam Pectinesterase 106 263 - -
Dere12g1265 617 Gene3D Invertase/pectin methylesterase inhibitor family protein 106 263 IPR035513 -
Dere12g1265 617 Gene3D - 299 617 IPR012334 -
Dere12g1265 617 Pfam Pectinesterase 306 602 IPR000070 GO:0030599|GO:0042545
Dere12g1265 617 FunFam Pectinesterase 300 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1265 Dere-ChrDere12 23744238 23751447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1265 63 617 Carbohydrate Esterase AT3G14310 67.925 0.0 768