Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1264 ATGTATATGGGCAACTTAAAACAACTTTTCGCCGGAATATCCAGTTCCGACAACCGCATTCCCATGTCGAAGAACAAAAAGCCCTTCCTCTTCGCTCTCCTCATCACTCTACTCCTTGTTTCCGCCACCGTCGGCATTATCGCCGGACTTAATTCCCGCAAAAGCTCCGATATCGACAATGTCCGTTTCACCCCATCACACGCCATAGTCAAAACCGCTTGCAGTTCCACATTGTACCCAGACCTGTGCTTCTCGGCCATCACCGCCGAACCCGGCTTCGCCAAGAAAGTCTCCACCCACGAAGACGTTATAGAAATTTCTATAAACATAACCATCAGAGCCGTACTACTCAACTACTTCGCCGTCAAGAAGCTCCAAGCCAAAAGAAGCCTAACAAAGAGAGAGATCACCGCTCTTCACGATTGCTTGGAAACCTTTGACGACACCCTGGACGATCTTCGCAGTGTCATCGTCAAACTCGTGAACGCTGCTCTTCACGCCGACGACCTCATAACTCTTGCCAGCACCGCCATAACCAACCAAGAGACCTGCCTGGACGGATTCTCCCACGACGACGTGGATGAAAAGGTGAGGGAACTACTGAAGGACGGTCTCACGTACGTGGAACGCATGAGCAGCAACGCGCTGGCGATGATTAAGAACGTGACTGACGCTGAAGTGCCTATGAGCAACAGAAAAATGATGGAGGTGAAGGAGGAGGGGGTGGAGGAGAATGGGATTAGGTGGCCGGAGTGGATGTCCGCCGCCGACAGGAGGCTTCTGAAGGCGTCAACGGTGACTCCGAATGTGGTGGTGGCGGCGGACGGGAGTGGGAACTACAAGACGGTGTCGGCGGCGGTGGCGGCAGCGCCGGAGCACAGTAAGAAGAGGTATGTGATAAGAATAAAAGCGGGGGTGTACAGAGAAAACGTGGAGGTGCCGAAGAAGAAGACGAATATTATGTTTATGGGAGACGGAGCAGCGAAAACTATCATCACCGGAAACAGAAACGTCGTTGATGGAAGCACAACCTTTAACTCTGCCACCGTGATCGCAGTGGGAGAACGATTCCTGGCTCGAGACATAACCTTCCTGAACACGGCGGGTCCATCCAAATACCAAGCCGTGGCTCTTCGAGTGGGAGCCGACCTCGCAGCCTTCTACAAGTGCAGCATGATAGCGTATCAGGACACACTCTACGTCCACAGCAATCGCCAGTTCTTCGTGCGCTGCTTCATAGCTGGCACCGTCGACTTCATCTTCGGCAACTCGGCCGCCGTCTTCCAAAACTGCGACATCCACGCTCGGCGTCCCAACCCCAGCCAGAAGAACACGATCACCGCACAAGGAAGAGTGGACCGTAACCAGAACACCGGTATTGTCATCCAGAAGTGCAGGATCGGTGCCACCAAGGATCTGAAGCCAGTGAAGGCAAGCTTCCCAACGTACCTTGGGAGGCCATGGAAGAATTTCTCTAGGACTGTGATTATGGAAAGTACCTTAAGCGATGTGATAGACCCGGCTGGGTGGCTTCCTTGGGATGGGAATTTTGCATTGAACACTTTGTTCTATGGAGAGTATAAGAACTCTGGATCTGGTGCTGATACTTCTAAAAGGGTTAAGTGGAAAGGCTTTAAGGTTATTACCAGTGCTTCTGAGGCTCGAACTTATACTCCTGGTAGCTTCATTGCTGGCTCTAGCTGGTTGCCCTCTACTGGGTTTCCTTACACTCTTGGGCTCTAA 1743 0.5215 MYMGNLKQLFAGISSSDNRIPMSKNKKPFLFALLITLLLVSATVGIIAGLNSRKSSDIDNVRFTPSHAIVKTACSSTLYPDLCFSAITAEPGFAKKVSTHEDVIEISINITIRAVLLNYFAVKKLQAKRSLTKREITALHDCLETFDDTLDDLRSVIVKLVNAALHADDLITLASTAITNQETCLDGFSHDDVDEKVRELLKDGLTYVERMSSNALAMIKNVTDAEVPMSNRKMMEVKEEGVEENGIRWPEWMSAADRRLLKASTVTPNVVVAADGSGNYKTVSAAVAAAPEHSKKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGAAKTIITGNRNVVDGSTTFNSATVIAVGERFLARDITFLNTAGPSKYQAVALRVGADLAAFYKCSMIAYQDTLYVHSNRQFFVRCFIAGTVDFIFGNSAAVFQNCDIHARRPNPSQKNTITAQGRVDRNQNTGIVIQKCRIGATKDLKPVKASFPTYLGRPWKNFSRTVIMESTLSDVIDPAGWLPWDGNFALNTLFYGEYKNSGSGADTSKRVKWKGFKVITSASEARTYTPGSFIAGSSWLPSTGFPYTLGL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1264 580 Pfam Pectinesterase 269 565 IPR000070 GO:0030599|GO:0042545
Dere12g1264 580 Pfam Plant invertase/pectin methylesterase inhibitor 69 218 IPR006501 GO:0004857
Dere12g1264 580 SUPERFAMILY Pectin lyase-like 264 579 IPR011050 -
Dere12g1264 580 Gene3D - 262 580 IPR012334 -
Dere12g1264 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 222 IPR035513 -
Dere12g1264 580 SMART PMEI_2 65 218 IPR006501 GO:0004857
Dere12g1264 580 PANTHER PECTINESTERASE 38 570 - -
Dere12g1264 580 CDD PMEI-like_3 72 223 - -
Dere12g1264 580 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Dere12g1264 580 FunFam Pectinesterase 66 223 - -
Dere12g1264 580 NCBIfam pectinesterase inhibitor domain 63 222 IPR006501 GO:0004857
Dere12g1264 580 FunFam Pectinesterase 263 580 - -
Dere12g1264 580 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Dere12g1264 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 223 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1264 Dere-ChrDere12 23714784 23723881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1264 5 580 Carbohydrate Esterase AT3G14310 61.857 0.0 707