Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1263 ATGAGTAAGAAGAACCAGAAGCTCTTCTTCTTCCTTCTCCTCACTACTCTGCCCTTTGTTTCCTCCACTGTCGACATCGTCGCTGGAGTTAACTCCCACAAAAACTCCGGCGCCGACGTGGACAATGTACATTCCACCCCATCACACGCCATAGTAAAAAACGCTTGTAGTTCCACGTTGTACCCTGAACTGTGCTTCTCCGCCATCGTCGCCGAACCCGGCTGCTCCGACAGAGTCTTCACCCACAAAGACGTTATACAACAGTCCCTAAACATAACTATCAGTGCCGTACAACAAAACTACTTTACCGTCAAGAAGCTCCGAACCAGAAAAAGCCTGACAAAGAGAGGGAAAACCGCTCTTCACGATTGCTTGGAAACCATTGACAACACCCTGGACGAGATTCGCGGAGCCATCGCGTATCTCGAGGACGCCTCTCATCACGCCGACGACCTCAACACACTTGTCAGCGCCGCCATAACCAACCAGGAGACCTGCCTGGACGGGTTCTCCCACGGCGACGCGGATAGACACGTGAGGGAAGGGGAGCTGAGGGACGGGCACATGCACGTGGAACACATGTGCAGCAACGCGCTGGCGATGATTAAGAACATTACTGATACTGAAGCGTTGATCAGTAAAAGAAAAATGATGGAAGTGAATGGGAAGAAGGAGGAGGAGGATGGGATCAGGTGGCCGGAGTGGATGTCGGCTGCCGACAGGAGGCTTCTGCAGGCATCGACGGTGAATCCAAACGTGGTGGTGGCGGCGGACGGGAGTGGGGACTACAGCACGGTGTCAGAGGCGGTGGCGGCGGCGCCGGAGCGGAGTACGACGAGGTATGTCATAAGAATAAGTGCGGGGACGTATGTAGAGAACGTGGTGGTGCCGAAGACGAAGACGAATATTATGTTTGTGGGAGACGGAGCAACGAACACTATCATCACAGGAAGTAGAAATGTAGCTGATGGAAGCACAACCTTTAACTCTGCTACTGTGGCCATAGTAGGGCAAGGATTCTTGGCTCGAGACATAACGTTCCAAAACACAGCGGGTCCAACGAAGAGCCAAGCCGTGGCTCTGCGAGTAGGAGCCGACCTCTCGGCCTTCTACAGGTGCAACGTGCTAGCCTATCAGGACACACTCTACGTCCACAGCAATCGCCAGTTCTTCGTCGACTGCCTCATAGAAGGCACCGTCGACTTTATCTTCGGCAACTCCGCCGTCGTCTTCCAACTCTGCGACCTCCGCGCTCGGCGTCCCCTCACAGGCCAGGAGGACGTGATCACTGCACAAGGAAGAATCGACCCTAACCAGAACACCGGCATTGTCATCCAGAATTGCAGGATCAGTGCCGCCCAGGTAAGCATGCATGCATGCATGGCAAAGTCCTTAGATAGTTGTGGCTAG 1410 0.5404 MSKKNQKLFFFLLLTTLPFVSSTVDIVAGVNSHKNSGADVDNVHSTPSHAIVKNACSSTLYPELCFSAIVAEPGCSDRVFTHKDVIQQSLNITISAVQQNYFTVKKLRTRKSLTKRGKTALHDCLETIDNTLDEIRGAIAYLEDASHHADDLNTLVSAAITNQETCLDGFSHGDADRHVREGELRDGHMHVEHMCSNALAMIKNITDTEALISKRKMMEVNGKKEEEDGIRWPEWMSAADRRLLQASTVNPNVVVAADGSGDYSTVSEAVAAAPERSTTRYVIRISAGTYVENVVVPKTKTNIMFVGDGATNTIITGSRNVADGSTTFNSATVAIVGQGFLARDITFQNTAGPTKSQAVALRVGADLSAFYRCNVLAYQDTLYVHSNRQFFVDCLIEGTVDFIFGNSAVVFQLCDLRARRPLTGQEDVITAQGRIDPNQNTGIVIQNCRISAAQVSMHACMAKSLDSCG 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1263 469 PANTHER PECTINESTERASE 27 454 - -
Dere12g1263 469 NCBIfam pectinesterase inhibitor domain 46 205 IPR006501 GO:0004857
Dere12g1263 469 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 206 IPR035513 -
Dere12g1263 469 Pfam Pectinesterase 252 457 IPR000070 GO:0030599|GO:0042545
Dere12g1263 469 Gene3D - 245 463 IPR012334 -
Dere12g1263 469 Pfam Plant invertase/pectin methylesterase inhibitor 51 201 IPR006501 GO:0004857
Dere12g1263 469 CDD PMEI-like_3 55 206 - -
Dere12g1263 469 FunFam Pectinesterase 48 206 - -
Dere12g1263 469 FunFam Putative pectinesterase 57 249 448 - -
Dere12g1263 469 SMART PMEI_2 47 201 IPR006501 GO:0004857
Dere12g1263 469 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 206 IPR035513 -
Dere12g1263 469 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Dere12g1263 469 SUPERFAMILY Pectin lyase-like 247 454 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1263 Dere-ChrDere12 23691504 23694080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1263 3 452 Carbohydrate Esterase AT3G14310 60.421 0.0 527