Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1260 ATGGGTGACATATTAGAGTCAAATGAAAAATTGAGCGAGTCTCCTACAGTTGCAGTGACAGGAAAGATCATGGTGCTAGCCATAATAATCCTCTTCATGGTGGTTGTGTTTGTTCTGTTCCTCCATATCTACGCTAAATGGTTCTGGTGGAGCATTGAAGAAACCACTCCTCCGCCGCCTCGTCGCCGGCGCCGTCGTCGCTTTGTCTTCGCCCCCGGCCAAGATCCAGCGATTTACGGCACTCAGAGAAGTGGGCTCGACCCTTCAGTGCTTTTGTCCTTGCCAGTATTGGTGTACCAACCAGAAGACTTCAAAGATGGTTTGGAATGTGCAGTTTGTCTCTCTGAGCTAGTTCAAGGAGAAAAAGCGAGGCTTTTACCTAAATGCAATCATGGGTTTCATGTGGATTGTATAGATATGTGGTTTCAGTCACATTCTACTTGTCCACTCTGTAGAAACCCAGTTGCTCCTGAGTCCTCTAAGTGCAACAGCAGTTCAAGTGTTCGAGAAAATTCATCAGAGAATATTATTAGTCAATCACAAGCATCAGAAAATCTTCAAAATTCAGCTTCAGCTGCTGTGAGTGGCTCAGAGTCTCCAAATTTTCCAACTAATGTGTTGATTTGGGGAAATCAGACTCAAGTTAGTTCTATAAGTACTTCCTCGGAGGAAGAGGATCCTTCATCTTCTTCTATGGCTGGCAGCAGCAGTAGTAGTAGCAACAATAGACGCCATGAAATGCTGGTGATTGATATAGCAAGCGAGGTCAATTCTTCATCTTTATCTCCTTCTGCAAGCAGGTTTGTTGAAGATGAGCTGAAATCACCAGTGACAACGAGACTGAGGTCATTGAAGAGGCTTTTAAGCAGAGACAAAAGGTTAGGTCCTTGTAATCCTAGCTCCTTAGATGTGGAACAAGCAGGAAGAGGACAGAGCTAG 939 0.4462 MGDILESNEKLSESPTVAVTGKIMVLAIIILFMVVVFVLFLHIYAKWFWWSIEETTPPPPRRRRRRRFVFAPGQDPAIYGTQRSGLDPSVLLSLPVLVYQPEDFKDGLECAVCLSELVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVAPESSKCNSSSSVRENSSENIISQSQASENLQNSASAAVSGSESPNFPTNVLIWGNQTQVSSISTSSEEEDPSSSSMAGSSSSSSNNRRHEMLVIDIASEVNSSSLSPSASRFVEDELKSPVTTRLRSLKRLLSRDKRLGPCNPSSLDVEQAGRGQS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1260 312 SUPERFAMILY RING/U-box 93 158 - -
Dere12g1260 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 273 - -
Dere12g1260 312 MobiDBLite consensus disorder prediction 215 242 - -
Dere12g1260 312 MobiDBLite consensus disorder prediction 156 198 - -
Dere12g1260 312 SMART ring_2 110 151 IPR001841 -
Dere12g1260 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 161 IPR013083 -
Dere12g1260 312 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Dere12g1260 312 CDD RING-H2_EL5-like 109 152 - -
Dere12g1260 312 MobiDBLite consensus disorder prediction 157 198 - -
Dere12g1260 312 Pfam Ring finger domain 109 152 IPR001841 -
Dere12g1260 312 MobiDBLite consensus disorder prediction 290 312 - -
Dere12g1260 312 FunFam RING-H2 finger protein ATL3 79 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1260 Dere-ChrDere12 23651498 23652436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1260 21 292 C3H Transcription Factor Family AT1G53820 43.793 6.87e-67 210