Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1254 ATGGTGGAGGATCGGGGAACTTTGCTGGTGGTGTTCATCAGCACCTGCATTCTGGGCTGGATGCTCATTGCCGTCAATGGAACCACAGATCCAACTGATGTTGCTGCTTTAAAGGCTATGTTTAGCGGTATGAATTCTCCATCTGGGCTAGGTTGGAATGGTGATGATCCCTGCGTACAGTCTTGGAAAGGCATTACTTGCTCAGGCAACCGAGTTACTGAGATTAAGTTACCTAGTCTTGGACTATCTGGATCATTTGGTTACCTGCTACAAACTATGGCATCTGTGACCAACCTAGATATGAGTTACAATAATTTTGGAGGCGGCATACCATACCAACTTCCTCCAAATTTGCAGAGATTAGATCTCTCCCATAATCAATTCACTGGGAATTTACCATATTCTATTTCTGAGATGACTTCTCTTACATACCTAAATCTTGCTCACAATCAGCTACAGAATGGACTGACTGACATGTTTCAAAAGCTTTCTTCCCTATCCACATTGGATCTGTCTTTCAATTCTCTGTCAGGCAACCTCCCTCAGAGTTTCAGCTCACTTTCAAGCATGAACAACATGTATTTGCAAAACAACCATTTTACAGGCACCATTGATGTCCTTGCCAATCTGCCTCTTGATACTCTGAATGTGGAAAACAACCGTTTTACAGGCTGGATACCAGAACAGTTGAAAAACATAAACCTACAGAAGTCAAATAATGCATGGAGTTCAGGCCCTGCACCCCCTCCACCACCTGGTACTCCTCCTGCAAGTAGAAGCAACCGGAATCACAAATCTGGTGGAAGTAATGGTGATTCAGATACTGGCACCAGTGATGGGGGCAAAAAATCTGGTATAGGAGGCGGTGGTATTGCTGGAATAGTGATATCCATCCTTGTTGTTGGGGCAATAATAGCTTTCTTTTTGGTGAAAAGAAAATCCAGGAAGTCATCTTCAGATATAGAAAAACTTGACAATCAGCCCTTTGCTCCTCTTAATTCAAGTGAAGTGCATGAAGTGAAGTCTGTGCAAACTCCTTCTGTAGTTGACATGAAGACATTTGATACATCTGCCTCAATAAATCTTAAACCCCCACCCATTGAACGTCACAAATCATTTGATGAGAATGAATTTTCCAAGAAGCCCATTATTGTTAAGAAAACTGTAAAAGCTCCTGCAAATGTGAAATCATATTCTATAGCAGACCTACAGATTGCCACTGGTAGCTTCAGTGTGGATCACCTCCTTGGAGAGGGATCTTTTGGACGGGTTTACCGTGCTCACTTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTTCTTCCCCATGATCTGTCTGAAGATTTTACAGAAATAGTTTCAAACATCTCCCATTTGCATCATCCAAATGTAACAGAGCTTGTTGGTTATTGTTCAGAGCATGGACAGCACCTCCTAGTTTATGAGTTTCATAAAAGTGGATCACTGCATGACTTCCTTCACTTATCAGATGAATATAGCAAACCATTAATATGGAATTCCCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTTTAGAGTACCTGCATGAAGTTTGTTCACCATCAGTTGTTCATAAGAATATTAAGTCAGCCAACATATTGCTTGATGCGGAGCTTAATCCTCATCTTTCAGACTCTGGATTGGCAAGCTATATACCAAATGCAGATCAGGTCTCGGACCGTAATGCTGGATCTGGGTGTGATGCACCTGAAGTTGCCTTGTCTGGTCAATATACTCTGAAGAGTGATGTCTACAGCTTTGGTGTTGTTATGCTGGAGCTTCTTAGTGGACGAAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAATCCTTGGTTCGATGGGCAACACCTCAACTCCATGATATCGATGCACTGGCTAAAATGGTTGATCCTGCTCTGGAGGGGCTATACCCTGTTAAGTCTCTTTCTAGGTTCGCTGATGTCATTGCTCTTTGTGTTCAGCCAGAGCCTGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCATTGGTTCGGTTGGTGCAGCGAGCTAACATGAGCAAGAGGACATTTGGAACAGATCAAGGAGGATCCCAACGAGGAGGTGATGACCCAGACACACAAGATATGTAA 2148 0.4306 MVEDRGTLLVVFISTCILGWMLIAVNGTTDPTDVAALKAMFSGMNSPSGLGWNGDDPCVQSWKGITCSGNRVTEIKLPSLGLSGSFGYLLQTMASVTNLDMSYNNFGGGIPYQLPPNLQRLDLSHNQFTGNLPYSISEMTSLTYLNLAHNQLQNGLTDMFQKLSSLSTLDLSFNSLSGNLPQSFSSLSSMNNMYLQNNHFTGTIDVLANLPLDTLNVENNRFTGWIPEQLKNINLQKSNNAWSSGPAPPPPPGTPPASRSNRNHKSGGSNGDSDTGTSDGGKKSGIGGGGIAGIVISILVVGAIIAFFLVKRKSRKSSSDIEKLDNQPFAPLNSSEVHEVKSVQTPSVVDMKTFDTSASINLKPPPIERHKSFDENEFSKKPIIVKKTVKAPANVKSYSIADLQIATGSFSVDHLLGEGSFGRVYRAHFDDGKVLAVKKIDSSVLPHDLSEDFTEIVSNISHLHHPNVTELVGYCSEHGQHLLVYEFHKSGSLHDFLHLSDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDAELNPHLSDSGLASYIPNADQVSDRNAGSGCDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFGTDQGGSQRGGDDPDTQDM 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1254 715 MobiDBLite consensus disorder prediction 693 707 - -
Dere12g1254 715 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 487 - -
Dere12g1254 715 SUPERFAMILY Protein kinase-like (PK-like) 394 682 IPR011009 -
Dere12g1254 715 MobiDBLite consensus disorder prediction 238 282 - -
Dere12g1254 715 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Dere12g1254 715 Gene3D Transferase(Phosphotransferase) domain 1 489 702 - -
Dere12g1254 715 PRINTS Leucine-rich repeat signature 118 131 - -
Dere12g1254 715 PRINTS Leucine-rich repeat signature 163 176 - -
Dere12g1254 715 MobiDBLite consensus disorder prediction 693 715 - -
Dere12g1254 715 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Dere12g1254 715 Gene3D Ribonuclease Inhibitor 30 252 IPR032675 -
Dere12g1254 715 SUPERFAMILY L domain-like 50 232 - -
Dere12g1254 715 CDD STKc_IRAK 416 685 - -
Dere12g1254 715 MobiDBLite consensus disorder prediction 258 280 - -
Dere12g1254 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 488 696 - -
Dere12g1254 715 Pfam Protein tyrosine and serine/threonine kinase 412 682 IPR001245 GO:0004672|GO:0006468
Dere12g1254 715 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515
Dere12g1254 715 Gene3D Phosphorylase Kinase; domain 1 372 487 - -
Dere12g1254 715 ProSiteProfiles Protein kinase domain profile. 410 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1254 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 253 - -
Dere12g1254 715 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 82 683 - -
Dere12g1254 715 Pfam Leucine Rich repeats (2 copies) 116 152 IPR025875 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1254 Dere-ChrDere12 23601251 23609023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1254 9 714 Strubbelig Receptor Gene Family AT1G53730 66.806 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Dere12g1254 PK_Tyr_Ser-Thr 3e-41 CL0016