Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1249 ATGTTGCTATCATCGAATCTCCCAAGACTGGTAGCAACAAACAGTCAGCTACTACCAAATCATTTAGATATGGAACTCACATTGTCTCTTTTTATTCATGAGCATCCGTCTCACTACTACTACTATGCATATTTGTTGAAGAGTGAGCTGAAGCTCCTGATTTCCCTGCTTTATCTGGTCATTTGGGTGTTTACACTTTTTGTCAAAAAGGTAATGATGATAGTCAAAGACTATAGCATGGCTGAGGAACTGGATAAACCATTGCTTGATCCTGGGAACTTCAACCGTGAGGGAATTGATTTGGAACGTATCCCATTGGAAGAAGTGTTCGAACAGTTAAGAACATCGCGAAGAGGACTTTCATCTGAAGATGCAGAAGCTAGGCTGCATATATTTGGCCCCAACAAACTTGAAGAGAAGACAGAGAATAAATTTTTGAAATTTCTGAGTTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCAGCAGCAGTTATGGCAATTGTTCTTGCTAATGGAGGAGGGGAGGGTCCTGATTGGCAAGACTTTGTAGGCATTATATGCCTACTACTAATAAATTCGACAATTAGCTTTATAGAAGAAAATAATGCTGGGAATGCTGCAGCAGCACTGATGGCTCGTTTAGCTCCTAAAACAAAGGTTCTTAGAGATGGGCAGTGGCAAGAGCAAGATGCAGCTATTTTAGTTCCTGGAGATATAATCAGCATAAAGCTGGGAGATATCATTCCAGCTGATGCTCGCCTGCTTGAAGGAGACCCCCTGAAAATTGACCAGTCAGCTCTCACTGGAGAATCTCTGCCTGTCACTAAGAGGACAGGTGATGAAGTCTTTTCTGGTTCGACATGTAAGCATGGTGAGATAGAAGCCGTAGTAATAGCCACAGGGGTTAACTCATTTTTTGGAAAGGCAGCACACTTGGTTGACAGTACCGAAGTTGTTGGACATTTTCAGAAGGTCCTAACCGCAATTGGGAACTTCTGCATTTGCTCTATAGCTGTAGGAATGGTTCTTGAAATCATTCTGATGTTTCCAGTACAGCATCGCTCATATAGGGATGGAATCAACAATCTACTTGTTCTCTTAATTGGAGGAATACCTATAGCTATGCCAACAGTTTTATCTGTGACCCTTGCAATTGGATCTCATAGACTCTCACAGCAGGGAGCCATTACAAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTCCTATGCAGTGACAAAACTGGAACTCTTACTCTGAATCGCCTCACTGTTGATCGAAGCCTTATTGAGGTCTTTGACAGAAATATGGACAAAGATAAGGTTGTCCTACTAGCAGCCAGAGCAGCCAGACTGGAGAACCAGGATGCCATTGATACTGCCATCGTTAATATGCTAGCTGATCCAAAGGAGGCGCGTGCAAACATAACTGAGGTTCATTTTCTACCTTTCAATCCAGTGGATAAACGGACTGCAATTACATATATTGATTCTGATGGCAACTGGTATAGGGTCAGCAAAGGAGCTCCTGAGCAGATTCTAAATATGTGCCAAGAGAAAGACGAGATTGCTGGAAAAGTGCATTCGATCATTGACAAGTTTGCTGAAAGGGGCTTGAGATCTCTTGCAGTTGCTTATCAGGAAATTCCTGAAAAGTCTAAGGATAGTCCTGGAGGTCCTTGGACCTTCTGCGGGTTGTTGCCTTTGTTTGATCCTCCAAGACATGATAGTGCTGAGACCATACGTAGAGCACTAAATCTTGGAGTCTGTGTCAAGATGATTACAGGGGATCAGTTGGCGATTGCAAAAGAGACAGGCCGAAGACTAGGTATGGGGACAAACATGTACCCTTCTTCATCATTGTTCGGTCGTGACAAGGATGAAAATGAAGCTATCCCAGTAGACGAGCTGATTGAAAAGGCAGACGGCTTTGCTGGTGTATTTCCTGAACATAAGTATGAAATTGTGAAAATCTTACAAGAAAAGAAGCATGTAGTTGGAATGACTGGAGATGGTGTAAATGATGCGCCAGCTTTAAAGAAAGCAGATATTGGAATTGCCGTGTCAGATGCTACAGATGCTGCAAGAAGTGCTGCTGATCTAGTTTTAACTGAGCCAGGCTTAAGTGTGATTGTCAGTGCCGTGTTGACTAGCCGAGCTATATTTCAAAGAATGAAAAATTATACAATATATGCAGTCTCCATAACCATAAGGATAGTGCTTGGTTTTGTGCTCCTGGCATTGATTTGGGAGTATGATTTTCCACCTTTCATGGTCCTGATCATAGCGATACTGAATGATGGAACTATAATGACCATATCTAAAGACCGAGTAAAACCATCCCCAACACCAGACAGTTGGAAGCTGCCTGAGATCTTTGCAACTGGAATTGTCATTGGCACTTATCTTGCTTTGGTCACTGTCCTATTCTACTGGGCAGTAGTGGATACCACTTTCTTTGAGACGCACTTTCATGTAACATCCTTGTCCAGCGACAGTGAGAAAGTTTCATCTGCTGTGTATCTTCAAGTTAGCATCATTAGCCAGGCTTTAATTTTTGTTACCCGTAGTCGAGGCTGGTCTTTTCTGGAGAGACCAGGAGTTCTGTTGATGTGTGCCTTTGTAATTGCTCAATTGGTGGCAACCTTGATCGCTGTCTATGCACATATCAGCTTTGCTGATATCAGAGGTATTGGATGGGGTTGGGCTGGTGTGATATGGTTATACAGTTTAATCTTCTATATACCCTTGGACATTATCAAGTTCATCGTGCGCTATGCCTTGAGCGGAGAAGCCTGGAATCTCTTATTCGATAGAAAGACTGCTTTTACTTCGAAGAAAGACTATGGGAAGGAAGATAGGGCTGCAAAATGGGTTCTTTCTCAGAAGAGCCTTCAAGGATTGACTGCCATAAAGTTGGAGGTCAATGCAAGGAAATCTTCTTTAATAGCTGAACAGGCCAAGCGACGAGCTGAAATAGCCAGGTTGGGGGAGTTACACACTCTGAGGGGATATGTCGAGTCTGTAGTGAGACTTAAAAATTTAGACCAGAATGTGATCCAATCAGCTTACACGGTTTAA 3090 0.4265 MLLSSNLPRLVATNSQLLPNHLDMELTLSLFIHEHPSHYYYYAYLLKSELKLLISLLYLVIWVFTLFVKKVMMIVKDYSMAEELDKPLLDPGNFNREGIDLERIPLEEVFEQLRTSRRGLSSEDAEARLHIFGPNKLEEKTENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGEGPDWQDFVGIICLLLINSTISFIEENNAGNAAAALMARLAPKTKVLRDGQWQEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVNSFFGKAAHLVDSTEVVGHFQKVLTAIGNFCICSIAVGMVLEIILMFPVQHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRSLIEVFDRNMDKDKVVLLAARAARLENQDAIDTAIVNMLADPKEARANITEVHFLPFNPVDKRTAITYIDSDGNWYRVSKGAPEQILNMCQEKDEIAGKVHSIIDKFAERGLRSLAVAYQEIPEKSKDSPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLFGRDKDENEAIPVDELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADLVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWAVVDTTFFETHFHVTSLSSDSEKVSSAVYLQVSIISQALIFVTRSRGWSFLERPGVLLMCAFVIAQLVATLIAVYAHISFADIRGIGWGWAGVIWLYSLIFYIPLDIIKFIVRYALSGEAWNLLFDRKTAFTSKKDYGKEDRAAKWVLSQKSLQGLTAIKLEVNARKSSLIAEQAKRRAEIARLGELHTLRGYVESVVRLKNLDQNVIQSAYTV 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1249 1029 Gene3D - 426 573 IPR023299 GO:0000166
Dere12g1249 1029 PRINTS H+-transporting ATPase (proton pump) signature 844 865 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1249 1029 PRINTS H+-transporting ATPase (proton pump) signature 530 548 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1249 1029 PRINTS H+-transporting ATPase (proton pump) signature 703 728 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1249 1029 PRINTS H+-transporting ATPase (proton pump) signature 672 688 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1249 1029 PRINTS H+-transporting ATPase (proton pump) signature 644 660 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1249 1029 FunFam ATPase 4 plasma membrane-type 662 899 - -
Dere12g1249 1029 SFLD C1.7: P-type atpase like 396 724 - -
Dere12g1249 1029 FunFam Plasma membrane ATPase 217 301 - -
Dere12g1249 1029 Gene3D - 179 899 - -
Dere12g1249 1029 Gene3D - 980 1029 - -
Dere12g1249 1029 CDD P-type_ATPase_H 119 925 IPR006534 GO:0008553|GO:0016020|GO:0120029
Dere12g1249 1029 SUPERFAMILY Calcium ATPase, transmembrane domain M 100 931 IPR023298 -
Dere12g1249 1029 Gene3D - 411 709 IPR023214 -
Dere12g1249 1029 PRINTS P-type cation-transporting ATPase superfamily signature 695 707 - -
Dere12g1249 1029 PRINTS P-type cation-transporting ATPase superfamily signature 264 278 - -
Dere12g1249 1029 PRINTS P-type cation-transporting ATPase superfamily signature 568 579 - -
Dere12g1249 1029 PRINTS P-type cation-transporting ATPase superfamily signature 672 691 - -
Dere12g1249 1029 PRINTS P-type cation-transporting ATPase superfamily signature 590 600 - -
Dere12g1249 1029 PRINTS P-type cation-transporting ATPase superfamily signature 414 428 - -
Dere12g1249 1029 Pfam haloacid dehalogenase-like hydrolase 410 686 - -
Dere12g1249 1029 SUPERFAMILY HAD-like 410 719 IPR036412 -
Dere12g1249 1029 NCBIfam plasma-membrane proton-efflux P-type ATPase 119 890 IPR006534 GO:0008553|GO:0016020|GO:0120029
Dere12g1249 1029 SFLD p-type atpase 396 724 IPR044492 -
Dere12g1249 1029 FunFam Plasma membrane ATPase 426 573 - -
Dere12g1249 1029 SUPERFAMILY Calcium ATPase, transduction domain A 217 314 IPR008250 -
Dere12g1249 1029 SMART Cation_ATPase_N_a_2 100 172 IPR004014 -
Dere12g1249 1029 PANTHER CALCIUM-TRANSPORTING ATPASE 102 966 - -
Dere12g1249 1029 Pfam Cation transporter/ATPase, N-terminus 104 166 IPR004014 -
Dere12g1249 1029 Gene3D - 217 301 - -
Dere12g1249 1029 FunFam Plasma membrane ATPase 566 720 - -
Dere12g1249 1029 Pfam E1-E2 ATPase 215 393 - -
Dere12g1249 1029 NCBIfam HAD-IC family P-type ATPase 647 757 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1249 1029 NCBIfam HAD-IC family P-type ATPase 186 445 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere12g1249 1029 ProSitePatterns E1-E2 ATPases phosphorylation site. 416 422 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1249 Dere-ChrDere12 23481327 23492704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1249 80 1029 Primary Pumps ATPases AT1G17260 81.368 0.0 1557