Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1246 ATGACACAGGAGGTTCCCAGACAAAGACAAAGACCAAACCCATCAACATCAGCAGCAGAAAGACCCTCTTCTTCCTCTTCTTCCATTGTCACGGTTATGAGGTTAATGGTCTTTTTAATGGTACCGTTAGTTCTGTCCTGCCTCGTTGTTACTGTCTCCTCCTCTTGTACCCAATTGGATAAAGAGTCTCTCTTGGCCTTCCACAGCAATATATCCACGCTTTCCCCTTACTCTCCTCTCAATTGGTCTGCTTCTGTTGATTGCTGCTCTTGGGAAGGCATTCATTGTGATGATGTGAATAGGAATAATGGGGATCAGCGAGTTATTCGGCTATTGCTTCCATCCAGAGGACTCACCGGTTCTATATCCTCATCTCTCACGAAACTCACTAGTCTCTCTCAGCTCAATCTTTCCCATAATCGATTTTCTGGTAATCTCCCAACCCAATTCTTCTCACTCCTTAATCACCTGAATATTCTTGATTTAAGCTACAATCGTCTCTCTGGTGAATTGCCGACCTCTGATGGTAATAACAACACTTCCAGTAGTATTATCCAGGAGCTTGATTTGTCTAGCAATCTATTTCATGGAGAACTCCCCTCTTTTTTCCTTCAATCCCTTACAGCTGCAGCAGAAGGAGGGGCTTTAACATATTTTAATGTTAGTAACAATAGCTTCACAGGTCAAATTCCCACTTCTCAACTTTGCAGTAACGGTAGTAATTCATCTCTCAGATTCTTGGATCTTTCTTCCAATGATTTCAATAGTTCAATTCAACCTGGATTGGGAGCATGTTCCAAGCTTGAGGTTTTCCGAGCAGGTTTCAATTTTCTATCTGGGCCTCTTCCTGGTGATCTTTTTGATGTCGTTTTCCTCAGAGAAATCTCCTTGCCCCTCAATAAACTCTCTGGAAATATTGATGATGGCATTGTCAACCTTGCTAACCTCACAGTTCTGGAGCTCTACTCCAATGATTTCTGGGGTCCCATCCCACGAGATATTGGTAAGCTATCCAAGCTGGAAAAGCTACTCCTTCATATTAACAACTTGACTGGTACTTTGCCCCCATCTCTGACGAATTGTGTCAATCTTGTCAAGTTAAATTTAAGGGTCAACCATTTGGTGGGAAATCTCTCAGAATTCAATTTCTCCAGATTCCTCCAGCTTACTACGCTTGATCTTGGCAACAATAATTTTACGGGTAATTTACCAACAACCCTTTATGCATGCAAGTCACTAGCTGCAGTAAGGCTAGCTTTTAATAAGCTTGAGGGACAGATCACCCCAGACATACTTGGACTTGAGTCTCTGTCTTTCCTATCAATATCGACCAACTACCTAAGAAATTTCACGGGAGCTATGAAGATACTCACGGGCCTCAAAAACCTTAGTACCCTTGCCCTCTCAAAGAATTTTTATGATGAAACCATGCCAAATGATGAGAACTTAGTAGGCCCAGATGGGTTTCAAAAACTCCAAGTTCTAGGCTTGGGTGGTTGTAATTTCACAGGTCAAATACCAGGCTGGCTTAAAAAGCTTAGGAAACTCGAGGTCATCGACCTGTCCTATAATCTAATCACTGGTTCAATTCCTCCTTGGTTGGGCACACTTCCTCAGCTTTTCTACATAGACTTGTCTTATAACCACCTTACAGGAATATTTCCCACGGAGCTCACAAGAATTCCAGCATTAACATCACAACAGGCAAATTATAATATAGAAAGGTCTTACCTGGAGTTACCTGTCTTCATTGTGCCGAACAATGCTTCTCAGCAGCAATATAATCAGCTTTCCAACCTACCACCAGCAATATATCTGAGAAACAACAGCCTCAGTGGCAGTATCCCCACAGAGATTGGCCAAATGGAAGTCCTTCATCAGCTGGATCTGGGTAATAACAACTTCTCTGGCAGTATTCCAGTTCAGATTTCTAACTTGACTAACTTAGAGAGATTAGACCTCTCTGGAAACCGATTATCTGGTGAAATTCCTGATTCACTCAAAAGCCTGCATTTCTTGTCATTTTTCACTGTGGCAAACAATGATCTTCAGGGACAGATACCAACCGGTGGTCAATTTGATACTTTCCCACCTTCCAGCTTCGCAGGGAACCTGCGATTGTGTGGTTCAGCTGTTCAACGCTCTTGTCCTAGTCGACAAGATGATAATGGAATTCGTCGCACCCCAAACAAAAGAATAATGATTGGACTTGTCATCACAGTCTTTTTTGGCACTGTTTCAATTGTGATTGTGTTGGCAATCTGGATACTTTCTAAGAGGAGGATCAATCCAGGAGGAGACTCTGACAAGATTGAACTAGAATCAATTTCAGCCAACTCCAACAGTAATGTTCATCCTGAAGTTGATAAGGAGGCTAGCCTAGTGGTTTTGTTCCCGAACAAAACAAATGAAATCAAAGATCTTACTATATCTGAGATCTTAAAAGCCACTGAAAATTTCAGTCAAGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACGTTACCTGATGGCACTAAGCTAGCCATCAAGAAACTTTCAGGAGATTTGGGGCTTATGGAGAGGGAATTTAAAGCCGAGGTAGAGGCTCTGTCGACGGCCCAACATGAGAATTTAGTTGCATTGCAAGGTTACTGTGTGCATGATGGCTTTCGGCTTCTCATATATACTTACATGGAAAATGGAAGTCTGGATTATTGGTTGCATGAAAAAGCTGATGGTGCATCTCAACTTGATTGGCCAACTCGACTGAAGATAGCACAGGGTGCGAGTTGTGGGTTGGCTTACATGCATCAGATATGTGAACCTCACATTGTGCATCGCGATATAAAGTCAAGCAATATCCTCCTTAATGAAAAGTTTGAGGCACATGTTGCTGATTTCGGGTTATCTCGATTGATTCTTCCTTATCACACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCTGAATATGGACAAGCGTGGGTGGCCACTCTCAGGGGAGATGTGTACAGCTTTGGGGTTGTCATGCTAGAGCTGCTTACTGGGAGGAGGCCTTTTGACATATGCAAGCCAAGAATGTCAAGGGAATTGGTTGGCTGGGTGCAACAAATGAGGAGTGAAGGAAAACAAGACGAAGTCTTCGACCCCCTTCTGAGAGGAAAAGGCTTTGAAGAGGAGATGCTGCAGGTACTTGATGTGGCCTGCTTGTGTGTCAACCAGAATCCTTTCAAGAGGCCAAGCATCAGAGAAGTTGTTGATTGGCTGAAGAATGTAGGATCAACCAAACAACACCAGAATAAAGACTAG 3315 0.4268 MTQEVPRQRQRPNPSTSAAERPSSSSSSIVTVMRLMVFLMVPLVLSCLVVTVSSSCTQLDKESLLAFHSNISTLSPYSPLNWSASVDCCSWEGIHCDDVNRNNGDQRVIRLLLPSRGLTGSISSSLTKLTSLSQLNLSHNRFSGNLPTQFFSLLNHLNILDLSYNRLSGELPTSDGNNNTSSSIIQELDLSSNLFHGELPSFFLQSLTAAAEGGALTYFNVSNNSFTGQIPTSQLCSNGSNSSLRFLDLSSNDFNSSIQPGLGACSKLEVFRAGFNFLSGPLPGDLFDVVFLREISLPLNKLSGNIDDGIVNLANLTVLELYSNDFWGPIPRDIGKLSKLEKLLLHINNLTGTLPPSLTNCVNLVKLNLRVNHLVGNLSEFNFSRFLQLTTLDLGNNNFTGNLPTTLYACKSLAAVRLAFNKLEGQITPDILGLESLSFLSISTNYLRNFTGAMKILTGLKNLSTLALSKNFYDETMPNDENLVGPDGFQKLQVLGLGGCNFTGQIPGWLKKLRKLEVIDLSYNLITGSIPPWLGTLPQLFYIDLSYNHLTGIFPTELTRIPALTSQQANYNIERSYLELPVFIVPNNASQQQYNQLSNLPPAIYLRNNSLSGSIPTEIGQMEVLHQLDLGNNNFSGSIPVQISNLTNLERLDLSGNRLSGEIPDSLKSLHFLSFFTVANNDLQGQIPTGGQFDTFPPSSFAGNLRLCGSAVQRSCPSRQDDNGIRRTPNKRIMIGLVITVFFGTVSIVIVLAIWILSKRRINPGGDSDKIELESISANSNSNVHPEVDKEASLVVLFPNKTNEIKDLTISEILKATENFSQANIIGCGGFGLVYKATLPDGTKLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLIYTYMENGSLDYWLHEKADGASQLDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLNEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPFDICKPRMSRELVGWVQQMRSEGKQDEVFDPLLRGKGFEEEMLQVLDVACLCVNQNPFKRPSIREVVDWLKNVGSTKQHQNKD 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1246 1104 FunFam Leucine-rich repeat receptor-like protein kinase 896 1102 - -
Dere12g1246 1104 Pfam Protein kinase domain 821 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1246 1104 PRINTS Leucine-rich repeat signature 157 170 - -
Dere12g1246 1104 PRINTS Leucine-rich repeat signature 646 659 - -
Dere12g1246 1104 Pfam Leucine rich repeat 491 550 IPR001611 GO:0005515
Dere12g1246 1104 Pfam Leucine Rich Repeat 648 670 IPR001611 GO:0005515
Dere12g1246 1104 Gene3D Ribonuclease Inhibitor 384 724 IPR032675 -
Dere12g1246 1104 FunFam Receptor-like protein 2 58 185 - -
Dere12g1246 1104 Gene3D Phosphorylase Kinase; domain 1 779 895 - -
Dere12g1246 1104 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 457 1092 - -
Dere12g1246 1104 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Dere12g1246 1104 SMART LRR_typ_2 513 537 IPR003591 -
Dere12g1246 1104 SMART LRR_typ_2 646 670 IPR003591 -
Dere12g1246 1104 SMART LRR_typ_2 129 153 IPR003591 -
Dere12g1246 1104 SMART LRR_typ_2 337 361 IPR003591 -
Dere12g1246 1104 SMART LRR_typ_2 154 178 IPR003591 -
Dere12g1246 1104 SMART LRR_typ_2 386 410 IPR003591 -
Dere12g1246 1104 SMART LRR_typ_2 242 265 IPR003591 -
Dere12g1246 1104 SMART serkin_6 820 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1246 1104 SUPERFAMILY L domain-like 84 306 - -
Dere12g1246 1104 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672|GO:0006468
Dere12g1246 1104 Gene3D Ribonuclease Inhibitor 283 383 IPR032675 -
Dere12g1246 1104 Gene3D Transferase(Phosphotransferase) domain 1 896 1104 - -
Dere12g1246 1104 Gene3D Ribonuclease Inhibitor 59 181 IPR032675 -
Dere12g1246 1104 SUPERFAMILY L domain-like 593 699 - -
Dere12g1246 1104 MobiDBLite consensus disorder prediction 1 24 - -
Dere12g1246 1104 ProSiteProfiles Protein kinase domain profile. 820 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1246 1104 FunFam Tyrosine-sulfated glycopeptide receptor 1 383 721 - -
Dere12g1246 1104 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524
Dere12g1246 1104 SUPERFAMILY L domain-like 238 572 - -
Dere12g1246 1104 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 787 895 - -
Dere12g1246 1104 SUPERFAMILY Protein kinase-like (PK-like) 804 1091 IPR011009 -
Dere12g1246 1104 ProSiteProfiles Leucine-rich repeat profile. 648 670 IPR001611 GO:0005515
Dere12g1246 1104 Pfam Leucine rich repeat N-terminal domain 60 97 IPR013210 -
Dere12g1246 1104 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1246 Dere-ChrDere12 23459252 23462566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1246 34 753 Miscellaneous Gene Families AT1G17240 52.820 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Dere12g1246 Pkinase 9.1e-40 CL0016