Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1240 ATGGAATTGCTGATGCAAGAAGTAAAAGGGTATTCTAATGACAGAGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAGCAGAGCTAGTTAGAGAGGAAAGCAGCAATAGTAAGAATTACCTTCTTTTCTCAGCAAATTACGAAACTCGTCCTCCTCGTCATCATCATCATCAACATTCATGGTTGGGGCTTCATGATCATCACTCTCCAGATGCCACTACCCCCTCCGAATCTCACAATTCATCATCTGGATTAGGGTTACCGTCAGCACCTACCACCAATTTCACCAATAATCATAGGAAGCTAGACCTCATGGACTTATCTCTAGGAGGAATTGGAAACAACAAAGATAATGAAGAGCAAGATGAAGCTAATTTTCATGGAGGAGGAGGAGGTAGCAGTAGTAACGGTGTCGTTGCTCCTATTGAGAAGGAGCACATGTTCGATAAAGTCGTCACTCCGAGTGACGTAGGCAAGCTCAATCGCCTCGTAATACCCAAGCAGCACGCGGAGAAGTACTTTCCTCTGGATTCTTCCTCCAACGAGAAAGGGCTGCTTCTGAATTTCGAGGACCGGAACGGCAAGATGTGGCGGTTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACGAAAGGTTGGAGCCGCTTCGTGAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCAGCGCGGCGCCGGCGAGTCCTTCAGGCATAGGTTGTACATAGATTGGAGGCGAAGACCTGATCACGGAGTACTACCAGGAGGCCCTGATCCCACCTTCATTACACCTTTTCTTCTTCATCCCAATCAGCCGACGCAATTTTCTCAGTACTCCGTCAGATGGGGCGGCCGATTATACTCGCTTCCGTCGTCGGCCCCGGCGCCGCGGCAGCTGAATTATGGTAATATGTTTCCGTTTCATCATCAACAACAACAAGAGATCAGGCATCACCCATGGCAGCACCAGCAGCACCATTATAATGCGATGAATTCGGGATCTGGTTCGGTGTATTCGAACTTGATAGGGCAACAAGAGGGAGGCAATGTTCCCATGATTATCGATTCTGTCCCGATTGATCATTATCATCATCCTCATCAGCACCAACATTATCATGGTAAGAATAGTAGTAGTAGTACTATTGCTACTGCTGGAAAAAGGCTTAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTTCGCCATCAGTGGAAGAACCCAGATGTTGTTATGTGACATCAATAGCTAATTCATCAATTTCCTCGTCTTCTATTACTCCACCACCTCTTCAGTACTTGAGGGTACCCCATGAAGATCCAATTTCTTCATCGCCATCGTTATCATCAGCAAGGTTTCAGAGTCATCAGAGAGGGGAAACTTCGATGCTTTTTGATTTGGATCCCTCGTTGCAATACAGGCAGTGA 1449 0.4693 MELLMQEVKGYSNDREEEEEEEEEEAELVREESSNSKNYLLFSANYETRPPRHHHHQHSWLGLHDHHSPDATTPSESHNSSSGLGLPSAPTTNFTNNHRKLDLMDLSLGGIGNNKDNEEQDEANFHGGGGGSSSNGVVAPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGAGESFRHRLYIDWRRRPDHGVLPGGPDPTFITPFLLHPNQPTQFSQYSVRWGGRLYSLPSSAPAPRQLNYGNMFPFHHQQQQEIRHHPWQHQQHHYNAMNSGSGSVYSNLIGQQEGGNVPMIIDSVPIDHYHHPHQHQHYHGKNSSSSTIATAGKRLRLFGVNMECASSSSSSSPSVEEPRCCYVTSIANSSISSSSITPPPLQYLRVPHEDPISSSPSLSSARFQSHQRGETSMLFDLDPSLQYRQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1240 482 FunFam B3 domain-containing protein 140 258 - -
Dere12g1240 482 Gene3D - 141 256 IPR015300 -
Dere12g1240 482 MobiDBLite consensus disorder prediction 111 136 - -
Dere12g1240 482 CDD B3_DNA 145 241 IPR003340 GO:0003677
Dere12g1240 482 MobiDBLite consensus disorder prediction 73 96 - -
Dere12g1240 482 MobiDBLite consensus disorder prediction 49 96 - -
Dere12g1240 482 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 411 IPR044800 GO:0003700
Dere12g1240 482 MobiDBLite consensus disorder prediction 438 482 - -
Dere12g1240 482 MobiDBLite consensus disorder prediction 449 468 - -
Dere12g1240 482 Pfam B3 DNA binding domain 147 250 IPR003340 GO:0003677
Dere12g1240 482 SMART B3_2 147 252 IPR003340 GO:0003677
Dere12g1240 482 ProSiteProfiles B3 DNA-binding domain profile. 147 250 IPR003340 GO:0003677
Dere12g1240 482 SUPERFAMILY DNA-binding pseudobarrel domain 144 246 IPR015300 -
Dere12g1240 482 MobiDBLite consensus disorder prediction 1 35 - -
Dere12g1240 482 Coils Coil 1 35 - -
Dere12g1240 482 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1240 Dere-ChrDere12 23395939 23397387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1240 104 416 B3 DNA Binding Superfamily AT1G01030 47.706 1.38e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere12g1240 B3 1.5e-28 CL0405