Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1239 ATGGAGGATGTGAGTATTAGGGATTCAGGGGCAGTTGAGGGTGACCCAGTAGTAACTCGTTCCTCTCCCTCCTACTGGCTGGACGCCTGCGAGGACATTTCCTGCGATCTCATTCACTTCGATGATGGTTCCATCGTCTCAGAACAGGTCGATAACAATATAATACAGGATGGACTGGTTAACGATTTCTTCGGCGGCATTGATAGCATTCTCGACAGTATTAAGAACGGCAGTGGCCTTCCTGTGTCCACTGAGACTGGGAATGAAAACCAACACGGTGCGTTTGCACTGCAAGCTGAAATCTCCGATCAGAAAGATAATTTTGTGAAGAATGGGTCGGCTGGTGAAAAACGTGGTCGTGCAGTTGATGTTTGTGAGCGTTCAGAAGCTGAAAATAATGGATACAAGCTATCAATTGTCAATGAAGGAGGGAGAACTCTGGGTGATTCTAAGGAAAATGGAGGTGGTGATCTATCAAGGGTGCATCATGTGGATGGTGAAGAAAGATTCGGCAAGAGGGCTCGGCTCGGCAACTATAAGAATGAGAGGCTTTATCCTGGCAGAGTGAACTATCACCCCAAGGAGAGGGAGAGATGTCCTAGCAGGAAGAGGCCCCGCGAATGGGATGAGGTTGATAGGAAGGACAAAGATAGTGTGAGAAAAAGAGAAAATTTCAGTGCTTGTGGTAGGAGAGATGTTAGAGATAGGGACTGGAGGGATAGAGAAAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGACATGGTCTTTCGCATAGGCACTTGGGAAGCTGATCGAAATCGGGAAGGAAAGGTGGCTAATGACACTAAACAGGAATGCAATGGAAAGGTTGAAACGAAAACTGAGGAGCCGAAGGAGAGAGTTCCTGAGGAACAAGTTAGAAAGTACCAGTTGGATGTTCTTGAGCAGGCAAAGCAGAAAAATACTATAGCTTTTCTTGAAACTGGGGCAGGAAAGACCCTTATTGCTGTTCTTCTCATTAAAAGTATTCATGAGAGTTTACAAAAGCAGAATAAAAAAATGCTTGCAGTCTTTTTAGTTCCCAAAGTTCCACTTGTTTACCAGCAAGCAGAAGTAATTCGCGAGCGAACTGGCTATCAAGTGGGCCACTACTGTGGAGAGATGGGGCAGGACTTTTGGGATGCTCGAAGGTGGCAGCGTGAATTTGAAACAAAACAGGTTCTAGTCATGACAGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAACAATCAATCTCCTGATTCTGGATGAATGCCATCATGCTGTGAAGAAACATCCATATTCGCTGGTGATGTCGGAGTTCTATCATACAACACCCAAAGAGAAGAGACCGTCTGTATTTGGAATGACTGCTTCTCCTGTTAATTTAAAGGGTGTCTCCAGCCAAGTGGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGTACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTACCAATGCCATCTGAAGTTGTGGTGGAGTATGACAAAGCAGCCAGTTTATGTTATCTTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAGTCAAGCTCAAGAAGAAGTAAATGGCAGTTTATGGGAGCTAGAGATGCAGGAGCCAAAGAAGAGTTACGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAAAAGTTGAGAGCTATCAACTATGCACTTGGTGAACTGGGTCAGTGGTGTGCATATAAGGTTGCGCATTCTTTTCTATCAGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTCGATGTCAAGTTTCAGGAATCCTATCTGAATAAAGTTGTCTCTCTTCTACAATGTCAACTTTCAGAAGGCGCAGTATCTGACAAGAATGCTGGAGTTTCTGAATCAGAGTGTGGTGTGACACAGGGTGGGTCCGAACCTGATGAGATTGAGGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGAGGGGAGCATGTGGATGTCATAATTGGAGCTGCTGTAGCTGATGGCAAGGTGACCCCGAAGGTGCAGGCTCTGATCAAAATACTTCTCAAGTATCAGCACACGGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCTTTAGTTCTACCGAAGGTTTTTGCAGAGCTTCCATCTCTGAGTTTTGTGAAGTGTGCGAGCTTGATTGGTCACAACAATAGTCAGGAAATGAGGACCTCACAAATGCAGGATACAATTGCAAAGTTCCGTGATGGGCGGGTTACTTTGTTAGTTGCCACAAGTGTTGCTGAAGAAGGACTTGATATACGACAATGCAATGTTGTTATCCGCTTTGACCTTGCTAAGACAGTTTTGGCATACATTCAGTCTAGAGGCCGAGCCAGAAAGCCTGGGTCTGACTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTTCTAAGGAATGCGAGGAATAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTAAGTCATCTTAAAGACACTTCAAGGTTGATTTCAGTAGATTCAAGACCAGGGACTGTTTACCAGGTGGAATCAACTGGTGCAGTTGTGAGCTTAAATTCTGCCGTAGGTCTTATCCACTTCTACTGCTCTCAGCTGCCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAAGCATGAAAAACCAGGAGGTCCCACTGAATATTCTTGCAAGCTTCAACTTCCATGTAATGCGCCATTTGAAAACCTTGAGGGTCCTATATGCAGTTCAATGCGCCTTGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGACAAAGGAAGTGGAGAAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGAGAGTTCTATCCCGAAGGTGTGGCGGACATACTAAAGGGGGAATGGATCTTATCTGGAAAAGATGCTTGCAGCAATTCCAAATTGCTTCATGTTTATATGTATGCTGTTAAGAGTGAAAACATAGGCCATTCGAAGGATCCGTTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCGCGAACCATGACTGCAAAGGCATCCCTTGTCTTTAGAGAGTCAATTGATATCACTGAGAGTCAGTTGGCATCCCTAAAAAGCTTTCACGTAAGACTAATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACCACTCCTTGGGATTCTGCGAAAGCATATTTGTTTGTCCCAGTGGTTGGCGATAAGTCTGTAGATCCTAAGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTAAAACAGATGCATGGAAAAATCCACTTCAGAGAGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACATTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCACAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTAAGAGAGAAGCCATACAAATGCAAAAGCATATTGGTAAGACTGCTCAGGGGAAATTGATGATGGCAGATACCTGTACTACTGCAGAGGATCTGGTAGGGAGAATTGTTACAGCTGCTCACTCGGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGACAGCAGAGAACTCTTTTCCCAGGAAAGAAGGCTATCTTGGTCCTCTGGAGTACAGCTCATATGCTGATTACTACAAACAAAAGTATGGAGTTGATTTAATTTACAAACAGCAACCTCTTATAAGAGGGCGTGGTGTGTCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACATAGTGAAACACATGAAGTTGAATCTGAAGAGACTCATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGCTATGCCTTGTACACCCCCTGCCTGGATCCCTTGTTCGTGGGGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGCATGCTACTTGCAATTCAACTTAGAAATATGATAAATTATCCTGTCCAGTCTTCCAAGATCTTGGAGGCCTTGACTGCTGCCTCCTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTAGGTGATGCTTATCTGAAATGGGTTGTCAGTAGATTTCTTTTCCTAAAATACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTCTTATATCAGTATGCTCTGAGTAAAGGACTTCAATCATATATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCTGGTGTGCTGCCTGTCTTTGATGAGGATACCAAGGATGGAGATTCATCTTTATTTGACCAGGAGGGATTAATTTCTAAGACTGAGAGGATGGATCATAGCTCTGATGGATTTGAGGATGATGAAATGGAAGACGGCGAACTTGAGAGTGACTCAAGTTCTTATAGAGTCCTATCCAGCAAGACACTAGCAGATGTTGTAGAAGCTCTGATTGGGGTGTTTTACGTTGAAGGTGGGAAGAATGCTGCTAATCATCTTATGAAATGGATGGGCATTCAGGTAGACTTTGATCCTGATAAGTTGGAGTGTACAAGAAAGCCAAGTAATGTTCCAGAGAGCATACTTAGGAGTGTTGACTTTGATGCTTTGGAAGGTGCTTTGAATCTGAAGTTTAGAGACAAGGGGTTGCTTGTGGAAGCAATAACTCATGCTTCAAGACCATCTTCCGGAGTATCCTGTTATCAGCGGCTAGAGTTCGTTGGTGATGCTGTCTTGGATCATCTCATTACAAGGCACTTGTTTTTCACTTACACAGATTTACCACCGGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAATAACGAAAATTTTGCACGTGTTGCAGTTAAACATGGTCTTCAGTTGCATCTTCGACATGGGTCCAGTGCCTTGGAAAAGCAGATTACAGAATTTGTGAAGGAAGTTCAAGATGAGTTATCAAAGCCAGGGTTCAATTCCTTTGGATTGGGAGACTGCAAAGCTCCCAAGGTCCTCGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGCGAGATACTGCCATTGTTTGGAAGGTTTTTCAGCCTCTCTTGCATCCTATGGTTACCCCAGAGACTTTGCCAATGCATCCCGTGCGTGAGCTGCAAGAACGATGCCAGCAGCAGGCTGAAGGCTTAGAATATAGAGCATGTCGAATTGGCAATTTGGCTACTGTTGAAGTATTCATTGATGGTGTGCAAGTAGGGGCTGCTCAGAATCCTCAAAAGAAAATGGCACAAAAGTTAGCTGCTAGAAATGCCCTCGCTGCTTTGAAAGAGAAGGAGGTAGCAAAAACTAAGAAGGATGATGAAAATGGCAAGAAAAAGAAGAATGGAAACCAGACATTCACCAGACAAACATTGAATGATATCTGTTTGCGGAGAAATTGGCCTATGCCATTCTACAGGTGTGTGAATGAGGGTGGTCCTGCACATGCAAAGAGGTTTACATTTGCAGTTCGTGTCAATACTACTGATAGAGGATGGACAGATGAATGCGTGGGAGAGCCAATGCCGAGTGTGAAGAAAGCCAAGGATTCTGCTGCTGTTCTTCTCTTAGGACTACTAAATAAATTATACTCGTGA 5889 0.4384 MEDVSIRDSGAVEGDPVVTRSSPSYWLDACEDISCDLIHFDDGSIVSEQVDNNIIQDGLVNDFFGGIDSILDSIKNGSGLPVSTETGNENQHGAFALQAEISDQKDNFVKNGSAGEKRGRAVDVCERSEAENNGYKLSIVNEGGRTLGDSKENGGGDLSRVHHVDGEERFGKRARLGNYKNERLYPGRVNYHPKERERCPSRKRPREWDEVDRKDKDSVRKRENFSACGRRDVRDRDWRDRERGYWERDKSGSNDMVFRIGTWEADRNREGKVANDTKQECNGKVETKTEEPKERVPEEQVRKYQLDVLEQAKQKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVSDKNAGVSESECGVTQGGSEPDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTSQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDSRPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACSNSKLLHVYMYAVKSENIGHSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTMTAKASLVFRESIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPVVGDKSVDPKNQIDWHLVETIIKTDAWKNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPKREAIQMQKHIGKTAQGKLMMADTCTTAEDLVGRIVTAAHSGKRFYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSETHEVESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLRNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEGLISKTERMDHSSDGFEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVFYVEGGKNAANHLMKWMGIQVDFDPDKLECTRKPSNVPESILRSVDFDALEGALNLKFRDKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHGLQLHLRHGSSALEKQITEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAIVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKTKKDDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLGLLNKLYS 1962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1239 1962 MobiDBLite consensus disorder prediction 982 1008 - -
Dere12g1239 1962 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1884 1955 - -
Dere12g1239 1962 SMART DRBM_3 1799 1860 IPR014720 -
Dere12g1239 1962 SMART DRBM_3 1885 1958 IPR014720 -
Dere12g1239 1962 Gene3D - 1796 1874 - -
Dere12g1239 1962 PANTHER DICER-RELATED 1255 1863 - -
Dere12g1239 1962 ProSiteProfiles Ribonuclease III family domain profile. 1624 1772 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 Gene3D - 694 860 IPR027417 -
Dere12g1239 1962 ProSiteProfiles PAZ domain profile. 1239 1379 IPR003100 GO:0005515
Dere12g1239 1962 Pfam PAZ domain 1261 1399 IPR003100 GO:0005515
Dere12g1239 1962 SUPERFAMILY PAZ domain 1260 1379 IPR036085 GO:0005515
Dere12g1239 1962 FunFam Endoribonuclease dicer-like 1 1619 1793 - -
Dere12g1239 1962 SMART riboneu5 1639 1795 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 SMART riboneu5 1418 1603 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 SUPERFAMILY dsRNA-binding domain-like 1888 1957 - -
Dere12g1239 1962 FunFam Endoribonuclease dicer-like 1 891 992 - -
Dere12g1239 1962 MobiDBLite consensus disorder prediction 1534 1555 - -
Dere12g1239 1962 Gene3D Ribonuclease III domain 1402 1596 IPR036389 GO:0004525|GO:0006396
Dere12g1239 1962 Gene3D Ribonuclease III domain 1619 1793 IPR036389 GO:0004525|GO:0006396
Dere12g1239 1962 MobiDBLite consensus disorder prediction 1862 1882 - -
Dere12g1239 1962 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 896 991 IPR005034 GO:0016891
Dere12g1239 1962 SUPERFAMILY dsRNA-binding domain-like 1754 1861 - -
Dere12g1239 1962 Gene3D - 295 539 IPR027417 -
Dere12g1239 1962 MobiDBLite consensus disorder prediction 1862 1879 - -
Dere12g1239 1962 SMART ultradead3 297 500 IPR014001 -
Dere12g1239 1962 MobiDBLite consensus disorder prediction 984 1008 - -
Dere12g1239 1962 SMART PAZ_2_a_3 1239 1403 IPR003100 GO:0005515
Dere12g1239 1962 ProSiteProfiles Ribonuclease III family domain profile. 1422 1583 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 CDD RIBOc 1640 1795 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 SUPERFAMILY RNase III domain-like 1618 1790 IPR036389 GO:0004525|GO:0006396
Dere12g1239 1962 ProSitePatterns Ribonuclease III family signature. 1659 1667 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 Pfam Type III restriction enzyme, res subunit 306 467 IPR006935 GO:0003677|GO:0005524|GO:0016787
Dere12g1239 1962 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1884 1959 IPR014720 -
Dere12g1239 1962 Gene3D Dicer dimerisation domain 891 993 IPR038248 -
Dere12g1239 1962 Gene3D - 1890 1960 - -
Dere12g1239 1962 CDD SF2_C_dicer 701 831 - -
Dere12g1239 1962 FunFam Endoribonuclease Dicer 1 1259 1377 - -
Dere12g1239 1962 Pfam Ribonuclease III domain 1436 1583 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 Pfam Ribonuclease III domain 1659 1772 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 CDD DSRM_DCL_plant 1890 1951 - -
Dere12g1239 1962 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 868 IPR001650 -
Dere12g1239 1962 FunFam Endoribonuclease dicer-like protein 296 536 - -
Dere12g1239 1962 CDD RIBOc 1418 1594 IPR000999 GO:0004525|GO:0006396
Dere12g1239 1962 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1798 1861 IPR014720 -
Dere12g1239 1962 FunFam Endoribonuclease dicer-like 1 695 857 - -
Dere12g1239 1962 MobiDBLite consensus disorder prediction 192 216 - -
Dere12g1239 1962 Gene3D paz domain 1257 1377 - -
Dere12g1239 1962 FunFam Endoribonuclease dicer-like protein 1401 1595 - -
Dere12g1239 1962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 835 IPR027417 -
Dere12g1239 1962 FunFam endoribonuclease Dicer homolog 1 1890 1959 - -
Dere12g1239 1962 Pfam Dicer dimerisation domain 896 984 - -
Dere12g1239 1962 Pfam Helicase conserved C-terminal domain 704 821 IPR001650 -
Dere12g1239 1962 SUPERFAMILY RNase III domain-like 1395 1601 IPR036389 GO:0004525|GO:0006396
Dere12g1239 1962 SMART helicmild6 737 823 IPR001650 -
Dere12g1239 1962 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 485 IPR014001 -
Dere12g1239 1962 CDD DEXHc_dicer 302 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1239 Dere-ChrDere12 23355389 23368012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1239 720 863 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 1.91e-06 50.8