Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1238 ATGTTACCTCTTGTTCTTTTTGGAGTACTCCTTGCGTGCTTGCCTTTTTCTTGCAATTCCATCCAGAACCAAGAAAAGCTACTAGAACCGTTTACTTTGCTTCCCAATTCCTGCAACGAAACATGTGGGAAACACCATATTCCTTTTCCATTCTACGTGAACTCGTCTTGTGTGTCAATTTCTAATGCTTTCAACCTCTCTTGCTCGAATTCCTCTTCCCTTTTTCTCAAAATCGGCTCAGAAAACTACCCAGTAATTGAATTCTTCCCCGATGGCGTACTGGTGGACTTCCCAGGCACAATCTCGTGTCGTCAGTACAACGACCTAAACTCATTTGGTAAAAGTCTGGTGAGAAATGAGCACTTCGGGGTCTCAGTGGATAATGTCATTGGTCTCTATGACTGTGAGGATTCGTCTCTGTGTAGAGCAGATTGTGAAACAGTTGACTTGCCTGGTTGTGATGGAAACGGTAATGGCGGTGGTGGGGGCTCACTTGGGTGCTGCTATCCACTCTCTGACCACAGCATATGGCATATTGGAGAAGGGTTTTCTATGTTTTCTCAGTTTGGATGCAGGGGATTCTCTAGTTGGGCTGTTCTGAGAGGGTCAAATTCAGGAAAGCGTGGGGTCAAATTGGAATGGGCTATTCCTAAGAACTCATCGAAGGAAGTTTGCTCAAGCAATGCAGAAATGGTGAACGCTACATCAGTTGAAGGAGGAACAAGGTGTGCGTGTCAGGATGGATATGTTGGTGATGGATTTGCTAACGGAACTGGATGCTTGCAGTCCTGTATCAAGGATGGACAGGAAGCATATGGCAGTGACTGCTACATCAAGAGAAAAGATCAAAGAAAATTTGTAATTATCGCAGGAATCCTTGGTCCAGTTCTTATTGTTGCCTCCTTGGTAGCACTATTTTATCTACTTAAAAGACCAGAAAAACCAGGGATGTTTGACACTGAGCAGGCGTATTATCACAACACCTCCCTTCAAAAGGCTTGTAGAACTCGACTCTTCAGCCACCATGAGCTAGAGGAAGCCACCAAAGGTTTCGAAGAGGATCAGAAACTCATGCACAGCAGCAGCAATGGCTCAATTTTTGCTGGAGTTCTTGGGGATGGATCACACATAGCTGTCCACAAGTTGCAATCTGAAAATGAGAAGGACCTTATTCAAGTCCTGTCACAAATTGAGGTTCTATCAGCTATTGTACATAGGAATATGGCCCGCCTTCTAGGATGCTGTATAGACTCTGGTTACCCCTCTTTGGTTGTCTATGAGTATCCAGCAAATGGTACCTTGGAGGAACATTTACATCAAAGCAAGGGACAGAAACTTTGTCTGGACTGGTATAGGAGATTGACTATTGCAGCAGAAACAGCTATTGTCCTTGCTTTCTTACAGTATGAGAACTCTCCTCCCATATTCCACCACAACCTTAAACCTGGCTGCATCTTCCTAGATGATAATTTTTCTGTCAAGATTGCAGGATTTGGGCTAACCAATTCCAAATTCAATTATGCCTATGACAACAACATCGAAGCCTTGCGTTTCTGCAAAAATGATGTTTACAACATGGGCGTGGTGCTTCTTGAGATCATTTCAGGCTCAAATCACTTGGACTCGCCAACTCAAGCACTTCAAAAAATAAGGGCAGGAAAGCTAGAGGAAATCATTGATCCCCTCCTTTACTACCACGAGCAACCATATTCCCGCCAAGAGCAGATACAAGTAATAGCAGACCTTGCAACAAGATGTATGTTGTTTGGTGGGGATGGAAAGCTGGGGATGATTGATGTTGCAAGGGAGTTGACACACATAACAAAAGAGAGTGTTGGTGTTGATGGAGGCATTGTGAGAGGACCTGCTTTGGAGGAGACCTTCTCAAATTCTAGCCTTCTTCAGATGATATCAATGTCGCCTGATTCTATTCAGCAGGAAAAAGCTGTTGAATCTTCAGATGCCCGTCCTCGTTTGAATCAAAGGATTCTTTCATCTTTGTCAAGAAGATCAGTTGCTGCCCACCCTTGGCATGATCTTGAAATTGGATCTGAAGCTCCCCAAATTTTCAATTGTGTTGTGGAGATCACTAAGGGAAGCAAGGTCAAATATGAACTTGACAAGAAGACTGGCTTGATCAAGGTTGATCGCATTTTGTATTCATCAGTAGTTTATCCTCATAACTATGGCTTCATCCCTCGTACTCTTTGCGAAGATAATGACCCACTTGATGTCTTGATCCTTATGCAGGAGCCAGTTCTTCCTGGTTGTTTCCTGAGAGCCAGGGCCATTGGACTGATGCCTATGATTGACCAGGGGGAGACAGATGACAAGATTATAGCAGTATGTGCTGATGATCCAGAGTACAAGCACTATACTGACTTCAAAGAACTTCCACCTCATCGCCTCTCCGAGATACGTCGTTTCTTTGAAGATTGTATCCTTAACAATCTTAAAACTAATGCCCCATCCCAATCAATACGACAGTCTACAATGCATATAGGAAAGACCATCAACTGTTCTGGAAATGTATCATGTACAATTCCTGTTGATTGA 2556 0.4354 MLPLVLFGVLLACLPFSCNSIQNQEKLLEPFTLLPNSCNETCGKHHIPFPFYVNSSCVSISNAFNLSCSNSSSLFLKIGSENYPVIEFFPDGVLVDFPGTISCRQYNDLNSFGKSLVRNEHFGVSVDNVIGLYDCEDSSLCRADCETVDLPGCDGNGNGGGGGSLGCCYPLSDHSIWHIGEGFSMFSQFGCRGFSSWAVLRGSNSGKRGVKLEWAIPKNSSKEVCSSNAEMVNATSVEGGTRCACQDGYVGDGFANGTGCLQSCIKDGQEAYGSDCYIKRKDQRKFVIIAGILGPVLIVASLVALFYLLKRPEKPGMFDTEQAYYHNTSLQKACRTRLFSHHELEEATKGFEEDQKLMHSSSNGSIFAGVLGDGSHIAVHKLQSENEKDLIQVLSQIEVLSAIVHRNMARLLGCCIDSGYPSLVVYEYPANGTLEEHLHQSKGQKLCLDWYRRLTIAAETAIVLAFLQYENSPPIFHHNLKPGCIFLDDNFSVKIAGFGLTNSKFNYAYDNNIEALRFCKNDVYNMGVVLLEIISGSNHLDSPTQALQKIRAGKLEEIIDPLLYYHEQPYSRQEQIQVIADLATRCMLFGGDGKLGMIDVARELTHITKESVGVDGGIVRGPALEETFSNSSLLQMISMSPDSIQQEKAVESSDARPRLNQRILSSLSRRSVAAHPWHDLEIGSEAPQIFNCVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLILMQEPVLPGCFLRARAIGLMPMIDQGETDDKIIAVCADDPEYKHYTDFKELPPHRLSEIRRFFEDCILNNLKTNAPSQSIRQSTMHIGKTINCSGNVSCTIPVD 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1238 851 FunFam probably inactive receptor-like protein kinase At2g46850 323 428 - -
Dere12g1238 851 PANTHER INORGANIC PYROPHOSPHATASE 638 817 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Dere12g1238 851 Pfam Inorganic pyrophosphatase 692 813 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Dere12g1238 851 CDD pyrophosphatase 688 812 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Dere12g1238 851 Pfam Protein tyrosine and serine/threonine kinase 362 535 IPR001245 GO:0004672|GO:0006468
Dere12g1238 851 Pfam Wall-associated receptor kinase galacturonan-binding 38 87 IPR025287 GO:0030247
Dere12g1238 851 FunFam Putative WAK-related receptor-like protein kinase family protein 430 617 - -
Dere12g1238 851 SUPERFAMILY Inorganic pyrophosphatase 669 812 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Dere12g1238 851 SUPERFAMILY Protein kinase-like (PK-like) 334 604 IPR011009 -
Dere12g1238 851 ProSitePatterns Inorganic pyrophosphatase signature. 739 745 - -
Dere12g1238 851 FunFam Soluble inorganic pyrophosphatase 4 671 844 - -
Dere12g1238 851 Gene3D Phosphorylase Kinase; domain 1 324 428 - -
Dere12g1238 851 Gene3D Inorganic pyrophosphatase 671 839 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Dere12g1238 851 ProSiteProfiles Protein kinase domain profile. 352 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1238 851 Gene3D Transferase(Phosphotransferase) domain 1 430 615 - -
Dere12g1238 851 Gene3D Laminin 222 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1238 Dere-ChrDere12 23344391 23352584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1238 38 607 Receptor kinase-like Gene Family AT2G23450 29.085 4.30e-57 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Dere12g1238 PK_Tyr_Ser-Thr 3.6e-16 CL0016