Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1236 ATGGACGCATACTCCTCTGGAGAAGAAGTGGTTGTTAAGACTAGAAAACCATATACAATCACAAAGCAAAGAGAACGATGGACAGAGGAAGAGCATAATAGGTTCCTAGAAGCTCTAAAGCTCTATGGAAGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAAACTGCTGTGCAAATTCGGAGCCATGCACAGAAGTTCTTTTCAAAGTTGGAGAAAGAGGCCCTTGTAAAAGGTGTTCCGATTGGACAAGCTCTTGACATAGAAATACCTCCTCCACGGCCCAAAAGGAAACCAAGCAATCCTTATCCTCGGAAGACCAATGTTGGTGCCCCAACATCACATTGTGGAGCAAAGGATGGAAAACTTCTCATGTCAATTTCATCTTCACCTAGTAAACAAGCACTGGACTTAGAGAAGGAACCGCATCCAGAGAAACCTAATGGAGATGTAAGTCCAACAACTGCAAAAGATAATAAGGATGAGAACTGCTCAAAAGTATTTACCATTCTCCAGGAGGCACCTTGTCCCTTTGTTTCCTCAGCAGACAACAATTCAATGTCAGTGCCACTGAGAAATCCATGCGCCTTGAGGGAGTTCATACCTTCGGTGAAAGAAGTGATAACTCGGGATGAAACAGATGAATCTTTTGTCACTATTGAACTTAAAGATAATCAGAAATTGGAGATAGGTGCTGATGGAAAACACACAGAACAGAGTAACGGCACCAGTAAAACCTCTAAGTTGGAGAATTCTGATGCTCCACATGCAAAATTGGTTCAGAGTAAGAAAACAGATGATCTCAATTGTGCATTGACAATTGAAGGGATGCAAGCAAATCAGAACTACCCAAGACATGTCCCTGTGCACGTTCTTGATGGGAAACTTGGAACAAGTACTCAAAATCTGTCCCAAGATATGTTGTTTCGAGAATCGATATTTCAGCCGATCGGCAGGGTTAATGGGCAACCTAATATTTTCACAAATTCAGCTGCATCAAATGTAAGTGAAAGTCAAAATAACTCGGCACAATCTTCTATTCATCAATCATTTCCTGCTTACCCTCCTCCATTTACACAAATACACCATAATCAAGATGATTACCAATCGTTTCTTCAAATGTCCTCTACATTTTCAAGTCTTATTGTCTCTACCCTGCTTCAAAACCCTGCAGCACATGCTACAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGTAGAAACATCTGCAGATTCTCCTGCATGCTCCCAAGGAGGCTTTCCATCTAGTCCAATTGGCTCTCCTCCAAGTATGGCAGCTATTGCAGCTGCTACTGTGGCTGCTGCAACTGCATGGTGGGCAGCCCATGGACTTCTTCCTTTGTGTGCCCCCTTTCATTCTGCTTTTCCCTGCCCTCCGGCATCAGCTACGGCAGTTCCTTCAGTGAATAATGGTGAAATACCAGCAGGCAATACAGAGCAAGGAGAAACTACTCTGCAGAATCCTCCGCAAGATCAGATATTAGATCCAGAATATTCAGATGCTCTGCAAGCTGAACATTCAGCTTCTAAGTCACCAGCTGTTTCTTCATCAGAGTCAGAGGAGAGTGGAGATGCTAAGGTTAATACTTCATCAAAGGTTACTGATCATGAGAACAACAAAGCAAATTCTGAGCACCTTGACTCTAACAAAACCAAAGGCAGAAAACAGGTTGACCGTTCCTCTTGTGGTTCCAATACAGCCTCTAGCAGCGAAGTAGAGACAGATGCATTAGTGAAGGATGAGAAAGGGAAAGAGGAGACCAAAGAACCTGATGCAAACCATTTAGCTACTGACTCTAGTAATCGTCGTACTAGAAGTGCTAGCAACCTTCCTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGGCTGGCTTTTCAGGCTCTTTTCTCCAGAGAGGTGCTGCCACAAAGCTTTTCTCCTCCGCATTACTTGACAAATCAGATTAATCAGAAGGACTACATTAAGGATATCAAGCATAATACAGATGATAGAAATTTAGACAACATCAGGAAATGCATTTCTGATTGTAGAGGACCAGAGAAAAACCTGCCATTTGTTGAAAACAATGAGGAAGAGGGGCTGCTAACCATAGGGCTCGGACAAGGAAAACTTAAGGCTAGTCGAACAGGGTTTAAACCTTACAAAAGATGTTCAATGGAGGCCAAGGAAAACAGGTTTGGAACTACCAGCAACCAAGATGAGGAGAATGGTCCCAAGAGAATACGCTTGGAAGGGGAGGCTTCAACTTAA 2280 0.432 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGQALDIEIPPPRPKRKPSNPYPRKTNVGAPTSHCGAKDGKLLMSISSSPSKQALDLEKEPHPEKPNGDVSPTTAKDNKDENCSKVFTILQEAPCPFVSSADNNSMSVPLRNPCALREFIPSVKEVITRDETDESFVTIELKDNQKLEIGADGKHTEQSNGTSKTSKLENSDAPHAKLVQSKKTDDLNCALTIEGMQANQNYPRHVPVHVLDGKLGTSTQNLSQDMLFRESIFQPIGRVNGQPNIFTNSAASNVSESQNNSAQSSIHQSFPAYPPPFTQIHHNQDDYQSFLQMSSTFSSLIVSTLLQNPAAHATASFAATFWPYANVETSADSPACSQGGFPSSPIGSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHSAFPCPPASATAVPSVNNGEIPAGNTEQGETTLQNPPQDQILDPEYSDALQAEHSASKSPAVSSSESEESGDAKVNTSSKVTDHENNKANSEHLDSNKTKGRKQVDRSSCGSNTASSSEVETDALVKDEKGKEETKEPDANHLATDSSNRRTRSASNLPDSWKEVSEEGRLAFQALFSREVLPQSFSPPHYLTNQINQKDYIKDIKHNTDDRNLDNIRKCISDCRGPEKNLPFVENNEEEGLLTIGLGQGKLKASRTGFKPYKRCSMEAKENRFGTTSNQDEENGPKRIRLEGEAST 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1236 759 MobiDBLite consensus disorder prediction 745 759 - -
Dere12g1236 759 SMART sant 23 71 IPR001005 -
Dere12g1236 759 MobiDBLite consensus disorder prediction 87 161 - -
Dere12g1236 759 MobiDBLite consensus disorder prediction 514 539 - -
Dere12g1236 759 Gene3D - 26 73 - -
Dere12g1236 759 MobiDBLite consensus disorder prediction 231 258 - -
Dere12g1236 759 MobiDBLite consensus disorder prediction 540 567 - -
Dere12g1236 759 MobiDBLite consensus disorder prediction 584 608 - -
Dere12g1236 759 MobiDBLite consensus disorder prediction 237 251 - -
Dere12g1236 759 MobiDBLite consensus disorder prediction 478 503 - -
Dere12g1236 759 PANTHER SWI/SNF COMPLEX-RELATED 7 643 - -
Dere12g1236 759 MobiDBLite consensus disorder prediction 478 625 - -
Dere12g1236 759 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Dere12g1236 759 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Dere12g1236 759 MobiDBLite consensus disorder prediction 732 759 - -
Dere12g1236 759 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Dere12g1236 759 MobiDBLite consensus disorder prediction 568 583 - -
Dere12g1236 759 CDD SANT 26 69 IPR001005 -
Dere12g1236 759 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Dere12g1236 759 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Dere12g1236 759 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Dere12g1236 759 MobiDBLite consensus disorder prediction 609 623 - -
Dere12g1236 759 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1236 Dere-ChrDere12 23306763 23316340 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g1236 Myb_DNA-binding 2.7e-13 CL0123