Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1234 ATGGCTCTTTCCTTGATGTCTGATTCAAACCTCGCAAGTGGCGAATCAAACCACCTCAAGCAAGCACATGCGGGGCACGTGCAGGAGGACGAAGACAGCTTCATCTCCGCCATGCAACTGGTGTCTTCCACTGTCATGCCCATGGCTCTGCAAGCCGCCTTTGAGCTCGGCGTCTTCGACGCGATGGCCGGAGCTGGTGAAGTTACAAAGCTCTCGGCAACGGACATTGCGGCCATGGTTTCTTGTAAGAACCCAGAAGCGCCGGCAATGCTAGATCGTGTGCTCAGCCTTCTAGCTAGCCACTCTGTGATTCATTGCTCTGTCGTCGATGATCCACAAGGATTGAAACAGAGGATGTACAGTCTGTCCCCCGTTTCGAAGTACTTCGTGACTGATGCCGATGGTGTTTCTTTGGGACATCTTATAGCCTTGATCCAAGACAAGGTCTTCATGGAAAGCTGGAGGGAGCTGAAAGATGCGATTAAAGAAGGAGGAATAGCATTCAACAGAGTATACGGAATGCATGCATTTGAGTACCCAAACACAGACCCAAGGTTCAACGATGCTTTCAGCAAAGGCATGCACGACAACACTGTCATAATCATGAGGAACATTCTGGAAACGTACAATGGGTTCGAGGAATTCGACAAACTTGTGGATGTTGGGGGTGGTCTTGGGGTCAACCTTAGTTTGATCACTTCTAAGTTCCCTCATGTGCATGGTATCAACTTCGATTTGCCTCATGTCATACAACATGCTCCTAACTACCCTGGTGTGCAACATGTGGGAGGAGATATGTTTCAAAGTGTTCCTCAAGGAGATGCCATTTTTATGAAGTGGATACTCCATGATTGGAGCGATGAACAATGTGTGAAGCTGTTGAAGAATTGCCACAAGGCCATTCCAGAGAATGGAAAGGTGATCATAGTAGATGCAGTTCTTCCCACTGAGCCACAAACTTGTACTGCAGTCCAGACTGCTCTTCAAGTGGACGTCCTCATGATGACCCAGAACCCAGGAGGCAAAGAGCGAACCCAGCAAGAGTTCTTGGATTTGGCTTCACTTTCTGGGTTCACTGGTATTAGATTGGTCTGCCATGTCTGTGGCATCTGGGTTATAGAATTTCACAAGTAG 1134 0.4824 MALSLMSDSNLASGESNHLKQAHAGHVQEDEDSFISAMQLVSSTVMPMALQAAFELGVFDAMAGAGEVTKLSATDIAAMVSCKNPEAPAMLDRVLSLLASHSVIHCSVVDDPQGLKQRMYSLSPVSKYFVTDADGVSLGHLIALIQDKVFMESWRELKDAIKEGGIAFNRVYGMHAFEYPNTDPRFNDAFSKGMHDNTVIIMRNILETYNGFEEFDKLVDVGGGLGVNLSLITSKFPHVHGINFDLPHVIQHAPNYPGVQHVGGDMFQSVPQGDAIFMKWILHDWSDEQCVKLLKNCHKAIPENGKVIIVDAVLPTEPQTCTAVQTALQVDVLMMTQNPGGKERTQQEFLDLASLSGFTGIRLVCHVCGIWVIEFHK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1234 377 Pfam Dimerisation domain 48 99 IPR012967 GO:0046983
Dere12g1234 377 PIRSF O-mtase 15 377 IPR016461 GO:0008168
Dere12g1234 377 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 38 377 IPR016461 GO:0008168
Dere12g1234 377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 375 IPR029063 -
Dere12g1234 377 Pfam O-methyltransferase domain 154 358 IPR001077 GO:0008171
Dere12g1234 377 PANTHER O-METHYLTRANSFERASE 37 358 IPR016461 GO:0008168
Dere12g1234 377 Gene3D Vaccinia Virus protein VP39 130 377 IPR029063 -
Dere12g1234 377 FunFam Caffeic acid O-methyltransferase 130 377 - -
Dere12g1234 377 FunFam Caffeic acid 3-O-methyltransferase 15 129 - -
Dere12g1234 377 Gene3D - 14 129 IPR036388 -
Dere12g1234 377 SUPERFAMILY "Winged helix" DNA-binding domain 29 132 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1234 Dere-ChrDere12 23293558 23297258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1234 30 377 Monolignol Biosynthesis Gene Families AT5G54160 54.310 8.25e-143 408