Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere12g1233 | ATGGCTCCTTCCTTGAACTCCGATTCAAACCTCGCAAATGGCGAATCAAACCACCTCAAGCAAGCACATGCGGGGCACGTGCAGGAGGACGAAGACAGCTTCATCTCCGCCATGCAACTGGTGTCTTCCACTGTCATGCCCATGGCTCTGCAAGCCGCCCTTGAGCTCGGCGTCTTCGACGCGATGGCCGGAGCCGGCGAAGGTACAAAGCTCTCCGCCACAGACATTGCGGCCATGGTTTCTTGCAAGAACCCAGAAGCGCCGGCGATGCTGGATCGTGTGCTCAGCCTTCTGGCTAGCCACTCTGTGATTCATTGCTCTGTCGTCGATGATCCACAGGGATCGAAACAGAGGATGTACAGTCTGACCCCTGTTTCGAAGTACTTCGTGACTGATGCCGATGGTGTTTCTTTGGGACATCTTATGGCCTTGATCCAAGACAAGATCTTCATGGAAAGCTGGAAGGAGCTGAAAGGTGCGATTAAAGAAGGAGGAATAGCATTCAACAGAGTATACGGAATGCATGCATTTGAGTACCCAAACACAGACCCAAGGTTCAACGATGCTTTCAACAAAGGCATGCACGACACCACCGTCATAATCATGAGGAACATTCTGGAAACGTACAATGGGTTCGAGGAATTCGACAAACTTGTGGATGTTGGGGGTGGTCTCGGGGTCAACCTTAGTTTGATCACTTCCAAGTACCCTCATGTTCATGGTATCAACTTCGATTTGCCTCATGTCATACAACATGCTACTAACTACCCTGGTGTGCAACATGTAGGAGGAGATATGTTTCAAAGTGTTCCTCAAGGAGATGCCATTTTTATGAAGTGGATACTCCATGATTGGAGCGATGAACAGTGTGTGAAGCTGTTGAAGAATTGCCACAAGGCCATTCCAGAGAATGGAAAGGTGATCATAGTGGATGCAGTTCTTCCCACTGAGCCACAAACTTGTACTGCAGTCCAGACTGCTCTTCAAGGGGACGTCCTCATGATGACCCAGAACCCTGGAGGCAAAGAGCGAACCCAGCAAGAGTTCTTGGATTTGGCTTCGCTTTCTGGGTTCACTGGCATCAGATTCGTCTCCCGTGTCTGTGGCTTTTGGGTTATGGAATTTCACAAGTAG | 1134 | 0.4974 | MAPSLNSDSNLANGESNHLKQAHAGHVQEDEDSFISAMQLVSSTVMPMALQAALELGVFDAMAGAGEGTKLSATDIAAMVSCKNPEAPAMLDRVLSLLASHSVIHCSVVDDPQGSKQRMYSLTPVSKYFVTDADGVSLGHLMALIQDKIFMESWKELKGAIKEGGIAFNRVYGMHAFEYPNTDPRFNDAFNKGMHDTTVIIMRNILETYNGFEEFDKLVDVGGGLGVNLSLITSKYPHVHGINFDLPHVIQHATNYPGVQHVGGDMFQSVPQGDAIFMKWILHDWSDEQCVKLLKNCHKAIPENGKVIIVDAVLPTEPQTCTAVQTALQGDVLMMTQNPGGKERTQQEFLDLASLSGFTGIRFVSRVCGFWVMEFHK | 377 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere12g1233 | 377 | Gene3D | - | 14 | 129 | IPR036388 | - | |
| Dere12g1233 | 377 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Dere12g1233 | 377 | FunFam | Caffeic acid 3-O-methyltransferase | 16 | 129 | - | - | |
| Dere12g1233 | 377 | PANTHER | O-METHYLTRANSFERASE | 37 | 363 | IPR016461 | GO:0008168 | |
| Dere12g1233 | 377 | PIRSF | O-mtase | 15 | 377 | IPR016461 | GO:0008168 | |
| Dere12g1233 | 377 | Pfam | Dimerisation domain | 48 | 99 | IPR012967 | GO:0046983 | |
| Dere12g1233 | 377 | Pfam | O-methyltransferase domain | 154 | 358 | IPR001077 | GO:0008171 | |
| Dere12g1233 | 377 | FunFam | Caffeic acid O-methyltransferase | 130 | 377 | - | - | |
| Dere12g1233 | 377 | Gene3D | Vaccinia Virus protein VP39 | 130 | 377 | IPR029063 | - | |
| Dere12g1233 | 377 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Dere12g1233 | 377 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 38 | 377 | IPR016461 | GO:0008168 | |
| Dere12g1233 | 377 | SUPERFAMILY | "Winged helix" DNA-binding domain | 29 | 132 | IPR036390 | - | |
| Dere12g1233 | 377 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 134 | 375 | IPR029063 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere12g1233 | Dere-ChrDere12 | 23283890 | 23286957 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere12g1233 | 30 | 377 | Monolignol Biosynthesis Gene Families | AT5G54160 | 53.448 | 3.19e-138 | 396 |