Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1232 ATGGCTACTTCCTTGAAGAACGACTCAAAGCACCTCAAGCAAGCACGTGACGAAGACAGCTTAATCTCCGCCTTACAGTTGGTGTCTTCCACCATCGTGCCCATGGCTCTGCAAGCCGCCATTGAGCTCGGTGTCTTCGACGCGATGGCCAGAGCCGGCGAAGGCGCAAAGCTCTCGGCAGCGGACATAGCGGCCATGGTTTCTTGCAAGAACCCAGAAGCCTCCACGATGCTTGATCGTGTGCTCAGGCTTCTGGCTAGCCACTCTGTGATTCATTGCTCTGTCGTCGATGATCCACAAGGGTCGAAACAGGGGATGTACAGTCTGTCCCCTGTTTCTAGGTGCTTTGTGACAGACACTGATGGTGCTTCTTTGGGACCTGTATTAGCCTTGTTGCATGACAAGGTCTTCATGGAAAGCTGGAGGGAGCTGAAGGGTGCGATTAAAGAAGGAGGGATAGCATTCAACAGGGTACATGGGATGCATGCCTTTGAGTACCTCAGCATGGATCCCAGGTGTACAGCATGTGGAAGGAGATATGTTTCAAAGGACGTCCTTATGATGACCCAGACCCTTGGAGGCAAAGAGCGAACCCAGCAAGAGTTCATGGATTTGGCTTCACTTTCTGGGTTCACTGGTATTAGATTGGTCTGCCATGTCTGTGGCCTCTGGGTTATAGAATTTCACAAGTAG 693 0.5152 MATSLKNDSKHLKQARDEDSLISALQLVSSTIVPMALQAAIELGVFDAMARAGEGAKLSAADIAAMVSCKNPEASTMLDRVLRLLASHSVIHCSVVDDPQGSKQGMYSLSPVSRCFVTDTDGASLGPVLALLHDKVFMESWRELKGAIKEGGIAFNRVHGMHAFEYLSMDPRCTACGRRYVSKDVLMMTQTLGGKERTQQEFMDLASLSGFTGIRLVCHVCGLWVIEFHK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1232 230 Gene3D - 2 115 IPR036388 -
Dere12g1232 230 PANTHER O-METHYLTRANSFERASE 25 170 IPR016461 GO:0008168
Dere12g1232 230 Pfam Dimerisation domain 35 86 IPR012967 GO:0046983
Dere12g1232 230 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 174 IPR029063 -
Dere12g1232 230 SUPERFAMILY "Winged helix" DNA-binding domain 17 119 IPR036390 -
Dere12g1232 230 Gene3D Vaccinia Virus protein VP39 178 230 IPR029063 -
Dere12g1232 230 Gene3D Vaccinia Virus protein VP39 117 177 IPR029063 -
Dere12g1232 230 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 230 IPR016461 GO:0008168
Dere12g1232 230 FunFam Caffeic acid 3-O-methyltransferase 3 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1232 Dere-ChrDere12 23274451 23277786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1232 167 230 Monolignol Biosynthesis Gene Families AT5G54160 40.625 1.06e-08 52.8