Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1230 ATGTCATGGCCAAAGAGTTCTTGGCACAGCATTTATTGTTTATTCTATATAAAGAGAGCATTATCAGCCTATCAGAAAATAAAGGAATATACATGTTATGTATGGGGTCTCCTTCTGCTTCTTCTTGGGGATTACATTTATTATCGCTCTTGTTTTGTTAGTTTCACTCTACGGAACAATTTAAGATCGGCTCTGATGGAGAGGCTTCAAGGACCCATCAATTCCTGTTTCATTGGTGAGCATTTGGAAGTTAACTGCTTAGAGCAAGGTCTGTTTGAGATAGAAGAAGAAGAACTTTTGATATCAAGTTTGAAGGATAAAATGCCATTTCTGGAGATGCTTCAGAGTGTGGAATCCCAATCCCCACCATTTTTCCCCTTCAAAGACACAAACTTTCAGACACTTGTAAGCCTGAAGAAACCATGGGACGAAGAAGAGGGAAAGCATGAAGCCTACATACCAAGAAGAACAACGGAGACCCAAATTCACGCACCGCCGGAGCTCGAGAGCTGCGTCACCCAGGACACGATGGAGGTGCCGTCGCGGTCGCCGGCGAAATCTGAAAATTGTAGGAGAAAGAGGAAGAGAACGAGACCAATTAAGAGTAAGGAAGACGTGGAGAATCAACGCATGACCCACATTACCGTCGAACGCAACCGCCGCCGCCAAATGAACGACCACCTCGGTGTTTTAAAATCACTCATGCCCGCTTCATATACTCTAAGGGGTGACCAAGCATCCATTATTGGAGGTGCAATAGACTTTGTGAAGGAACTGGAGCAGCTGCTTCAATCCCTGGAGGCAGAGAAAAGAACGAGAAGAAAGGAAGAAGTTGGACTCAGTTACGGAACGACGTCGTGTGGGGAAGAATCAAACTTTGGAGAAGAGTTGAAGGCAGAGATGAAGTCAGACTTAGCAGAAATAGACGTGACTGTGATTCAAAGCCATGTAAACCTGAAAGTTCAGTGCAAGAGAAGCGTTGGACAGTTGTTGAAAGCCATTGTTGGTCTTGAGCAGCTTAGGCTAACTATTCTGCACCTAAACATAACCTCTTCGCAGGCCTCGGTTCTCTACTCTTTCAATCTCAAGATTGAAGATGAGTGTAAGCTAGTGTCAGCAAGTGAAATTGCAGGAGCAGTTCAAGAGATTTTCAGGTTCATTAATGGAAGCTAA 1173 0.4425 MSWPKSSWHSIYCLFYIKRALSAYQKIKEYTCYVWGLLLLLLGDYIYYRSCFVSFTLRNNLRSALMERLQGPINSCFIGEHLEVNCLEQGLFEIEEEELLISSLKDKMPFLEMLQSVESQSPPFFPFKDTNFQTLVSLKKPWDEEEGKHEAYIPRRTTETQIHAPPELESCVTQDTMEVPSRSPAKSENCRRKRKRTRPIKSKEDVENQRMTHITVERNRRRQMNDHLGVLKSLMPASYTLRGDQASIIGGAIDFVKELEQLLQSLEAEKRTRRKEEVGLSYGTTSCGEESNFGEELKAEMKSDLAEIDVTVIQSHVNLKVQCKRSVGQLLKAIVGLEQLRLTILHLNITSSQASVLYSFNLKIEDECKLVSASEIAGAVQEIFRFINGS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1230 390 Coils Coil 256 276 - -
Dere12g1230 390 Gene3D - 199 284 IPR036638 GO:0046983
Dere12g1230 390 CDD bHLH_AtFAMA_like 211 279 - -
Dere12g1230 390 PANTHER MAX DIMERIZATION, MAD 152 387 - -
Dere12g1230 390 Pfam Helix-loop-helix DNA-binding domain 209 260 IPR011598 GO:0046983
Dere12g1230 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 281 IPR036638 GO:0046983
Dere12g1230 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 259 IPR011598 GO:0046983
Dere12g1230 390 SMART finulus 214 265 IPR011598 GO:0046983
Dere12g1230 390 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1230 Dere-ChrDere12 23247811 23253882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1230 102 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 45.860 1.65e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere12g1230 HLH 7e-09 No_clan