Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1227 ATGGGTGAAGTGGTTGTGGTTAGCGGTGAGAAGGAGATGGAGGTGAGGTTCAAGACAGAAGAGGAGATGAACAAAGTGAACCAGCTGAAGCATGATGGCTCCGAAGAAATGGTTAAGTGGGACAAGTTTCTACCTCGGATGGTGCTCAGAGTTCTGCTGGTTGAAGCTGATGATTCCACTCGCCAGATTATTGCTGCGCTTCTCCGCAAATGTAGTTACAGAGTTGCTGCAGTTTCTGATGGATTAAAGGCATGGGAGATATTGAAGAAGAAAGCTCCTGACATAGATCTCATATTAACTGAGGTGGATTTGCCATCGATATCTGGATTTGCACTTCTTACTTTAATCAAGGAGCATGACATTTGTAAAAACATTCCCGTCATAGTGATGTCTTCTCATGATTCAATTAGCATGGCATTGAAATGCATATTAAAAGGTGCAGCTGACTTTCTTATAAAACCTGTTCGGAGGAATGTGTTAATTACCTTGTGGCAACATGTGTGGAGAAGGCATCATATCAGCAGGCATACTCATGATTTAACATTTCATCAGAAAAAACCTGAAGCTACTTCAGAAAACAATGCTGCCAGCAATCATTCAACTGGTTCTGTGGCTTTTACACAAAAAGATAATGAATGCAGTGAGAAAGGGAGTGAGGCCCAAGCTGGCTTCATGAAATTTCTCAATAAAGACTGCATGTTTTGCCAACTCTTGTACAGAGCACTTAGTACATCATCTTTTTTGGAAGCTGAGATTGCATACATGGAAAATATGCAGGGTACATCCCAGCCCAGGAGTTCTTCAGATTTGAGCAACATTGACACAGTGAAGTATGTAGAGTCTATGAAACGTGAAAGGGACTCAGTTAAACATAACGATGGAAATACAATTGTGCCTTCTTACAAAGTAGTTGTTGCTGAGAGGTCGATTATTTGTGCATCAGAGGTTACTAGGTGCAACAGAACTATGAACCCAGCAAATTTGAGGCTAGAACAAGACAACAATTGTGCTGAAACGGAGAATCAAGATGAAGTTTTAAGAGCATGGTTAATCAGAGGCAATCCTAATTTTGATACAGAGATTCATGGCTGCAAGAATGAACCGGTAGAACCTTCTAGAGGAGCTATTGACTTGATTGCTGCATTTGAGAATCTTCCAAAGAATGCTGAAGAGAACTGTAGTATTAATGATGGTGGCACAAGCAAGTTTAATTGTGAACCAGAGTTGGAACTTTCATTAAGAAATTTTTCTGGTAGCTCATGTAAACAAGAAATTGAGGAAAGGCAAACATTGAACCATTCAAATGCATCTGCCTTTTCTTGGTATAGTAGTAATAAGTTGCTGCAGCCCCTTTTTCCATCACTATCAATGAGTTCTGCTGAAACATATAGCACTGAGTTGAATTCTCAGAGTTCTAAAGAAATATCTGGAATTGATACTTCTTGTCAGTACGGTGGGGCAAAACATTTTCAGGAGAATATGATCCCACTGTTCATTGGTCAGTCTGGACAAGTTGAAGTAAAATTGCCAAGCGGTCATCTTGGATCCTCTCCTGCTACTGTTGTTACTTCTGATTATATGTCTAGCGGATATGGGAATGTTATGGCTTCTATCTTCAACATGCAATCTAGAGCTCATCCCATTTGGAGTCCCAAACCATTGTGCCAGAAAGAAAATTCTTCGTTTCCCACCAGTACTTCGTTCCAGTCAAATGCTGAAAGTCACAACTTGGAACAGCAGTATCATTGGTCCGATGATGCTACCTTTTCTTCTCTTGATCAAAAAACTGCACATGATACAAACTACTTGGATCCTGCAATACATGATTATCCTTCCGCGTCTCAGAATACCAGGTTTAGTTTATGCCATGAGACTGCAAATCCCATTAACGATGATTCATGTGCAAGCATAGGCAGCAGAAAAACTGGAAATTATACTTCAGCTGTGGTAACTGAGGAAACCCCTGAAAGTTTTAGTGGACATGGTCATCATGATTATGATGAATACAGAGGAACAGATCCTCAGCGCTCCAGCCGAAGGGAAGCAGCTCTAACAAAGTTTCAACTGAAGAGGAAAGACAGATGCTATGAGAAAAAGGTCAGGTATCAATGCCGGAAAAGACTGGCAGAGCAGCGTCCTCGGATGAAAGGGCAGTTTGTACGTCAAGTGCAAAATGATTGTCCGGTCGTTGATTCTGGTGGTGGTTCCTGA 2211 0.4111 MGEVVVVSGEKEMEVRFKTEEEMNKVNQLKHDGSEEMVKWDKFLPRMVLRVLLVEADDSTRQIIAALLRKCSYRVAAVSDGLKAWEILKKKAPDIDLILTEVDLPSISGFALLTLIKEHDICKNIPVIVMSSHDSISMALKCILKGAADFLIKPVRRNVLITLWQHVWRRHHISRHTHDLTFHQKKPEATSENNAASNHSTGSVAFTQKDNECSEKGSEAQAGFMKFLNKDCMFCQLLYRALSTSSFLEAEIAYMENMQGTSQPRSSSDLSNIDTVKYVESMKRERDSVKHNDGNTIVPSYKVVVAERSIICASEVTRCNRTMNPANLRLEQDNNCAETENQDEVLRAWLIRGNPNFDTEIHGCKNEPVEPSRGAIDLIAAFENLPKNAEENCSINDGGTSKFNCEPELELSLRNFSGSSCKQEIEERQTLNHSNASAFSWYSSNKLLQPLFPSLSMSSAETYSTELNSQSSKEISGIDTSCQYGGAKHFQENMIPLFIGQSGQVEVKLPSGHLGSSPATVVTSDYMSSGYGNVMASIFNMQSRAHPIWSPKPLCQKENSSFPTSTSFQSNAESHNLEQQYHWSDDATFSSLDQKTAHDTNYLDPAIHDYPSASQNTRFSLCHETANPINDDSCASIGSRKTGNYTSAVVTEETPESFSGHGHHDYDEYRGTDPQRSSRREAALTKFQLKRKDRCYEKKVRYQCRKRLAEQRPRMKGQFVRQVQNDCPVVDSGGGS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1227 736 PANTHER TWO-COMPONENT RESPONSE REGULATOR 49 348 IPR045279 GO:0009736
Dere12g1227 736 SMART REC_2 49 164 IPR001789 GO:0000160
Dere12g1227 736 MobiDBLite consensus disorder prediction 187 202 - -
Dere12g1227 736 CDD psREC_PRR 51 154 - -
Dere12g1227 736 Pfam CCT motif 680 722 IPR010402 GO:0005515
Dere12g1227 736 Gene3D - 47 260 - -
Dere12g1227 736 MobiDBLite consensus disorder prediction 657 680 - -
Dere12g1227 736 SUPERFAMILY CheY-like 49 177 IPR011006 -
Dere12g1227 736 MobiDBLite consensus disorder prediction 179 202 - -
Dere12g1227 736 ProSiteProfiles Response regulatory domain profile. 50 168 IPR001789 GO:0000160
Dere12g1227 736 Pfam Response regulator receiver domain 51 162 IPR001789 GO:0000160
Dere12g1227 736 ProSiteProfiles CCT domain profile. 680 722 IPR010402 GO:0005515
Dere12g1227 736 MobiDBLite consensus disorder prediction 652 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1227 Dere-ChrDere12 23228043 23231851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1227 675 725 Response Regulator Gene Family AT5G24470 80.392 1.44e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Dere12g1227 Response_reg 2e-22 CL0304