Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1222 ATGATTCTTTTCGATGATAGCATTCCTATCACTGCTGAAAAAATCTCAACCTTGGTGAAAGCAGCAAATGTTGAAATCGAATCTTATTGGCCAGGCTTATTTGCTAAGCTTTCTGAGAAGCGAAGCATTGAGGATCTGATATTGAATTCTGGAGGTGGTGGTTCACCAGTCGCTGTCGCAGCTCCAGCTGCTGCCGCTGGCGGTACCGGAGCTGCTGCTGCAGCTGCTCCTCCCGCCGAGGAGAAGAAGAAGGAAGAACCCCAGGAAGAGAGTGATGATGACATGGGCTTCAGCTTGTTTGATTAG 306 0.4869 MILFDDSIPITAEKISTLVKAANVEIESYWPGLFAKLSEKRSIEDLILNSGGGGSPVAVAAPAAAAGGTGAAAAAAPPAEEKKKEEPQEESDDDMGFSLFD 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1222 101 MobiDBLite consensus disorder prediction 69 101 - -
Dere12g1222 101 Pfam 60s Acidic ribosomal protein 10 100 - -
Dere12g1222 101 Gene3D - 1 51 IPR038716 -
Dere12g1222 101 CDD Ribosomal_P1 1 55 - -
Dere12g1222 101 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 101 - -
Dere12g1222 101 FunFam 60S acidic ribosomal protein P1 1 51 - -
Dere12g1222 101 Hamap 50S ribosomal protein L12 [rpl12]. 1 101 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1222 Dere-ChrDere12 23177931 23178580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1222 1 101 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 52.475 1.74e-31 105