Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1221 ATGTCTCATCCAAGGCAATTCCAGATGGTGGGTGGTACTAACAATCCTGGGCACTACAATGACACAACTTTTACTAAGATCTTTGTGGGAGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCCTTGAGGCTGTTGTTATCACAGACAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGAAGAGCAAACTGCAATCTTGCATCTCTTGGAGCAAACAAGAATCGCCCACCAACTCACCAACATGGTGCTGGAAGGTTCAGACCAGGACCTGGACTGGTGGCTACACCTGCATACCATGGCTCTTCCTCTACATTTTTCCATCAACCTTCTGGCCAATACACATTTCCCTATTCAGTTTATGGGTATTCTGGATATTCACAAGACACCATGTATCCCATGAGCTATTATGGTGTGTATGGAGGTCAACAGTTTTCACCATACTACCCGTCTAGTGGGGCATCTGGGCCAGCAGGGTTAGTCCATAATATTTACCCTTTCTATGCTCAATATGCACAGAGTAGCCATGCTCAAGGCTTTGGAGTTCAATATCCCCAAATGGTACAATTCCCATTTCTGCCTCAGCACTATGGCTCCACTGGGATCCTTTCTTTTCCTTCTTCAATGCCAATGCCAACAACTACAACCAGTGCAGCTGCAACAACAGCAACCACAACAACAGCAGCAGCAGCAACAACAACGGCACTCGCTGTAGCAGCGGCAGCAGTTGGGACAGGTGCTTCCCAAGCCTCTGGAACAGCTTCTGAACAAAAATCTTCAACTTAG 882 0.4705 MSHPRQFQMVGGTNNPGHYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTHQHGAGRFRPGPGLVATPAYHGSSSTFFHQPSGQYTFPYSVYGYSGYSQDTMYPMSYYGVYGGQQFSPYYPSSGASGPAGLVHNIYPFYAQYAQSSHAQGFGVQYPQMVQFPFLPQHYGSTGILSFPSSMPMPTTTTSAAATTATTTTAAAATTTALAVAAAAVGTGASQASGTASEQKSST 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1221 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Dere12g1221 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Dere12g1221 293 CDD RRM_RBM24_RBM38_like 25 100 - -
Dere12g1221 293 Gene3D - 3 118 IPR012677 -
Dere12g1221 293 SMART rrm1_1 26 98 IPR000504 GO:0003723
Dere12g1221 293 SUPERFAMILY RNA-binding domain, RBD 19 124 IPR035979 GO:0003676
Dere12g1221 293 FunFam RNA-binding protein 24-B isoform X1 12 118 - -
Dere12g1221 293 PANTHER BOULE-RELATED 15 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1221 Dere-ChrDere12 23163435 23165246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1221 21 101 C2H2 Transcription Factor Family AT2G19380 44.444 4.38e-16 76.6