Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1217 ATGGTGGTTGCTAATGGTGAAGCCAAAGGCGAGAGAGAGAGAGGGGTTAATTTGCGAATATACGGTCCAAATGGTGGTTGTTTAAGAGGTGGTTTTCCATGGAGATTTTTAAGGTCAGGGGTCATAGTTGTGGATGTGGGCGTGTGTCCTTACTCTTCTTCCATCTTCTCCCCCACAACCCCACATCCTCCAAATTTCTGTGGGACCCTCATGTGTTGCCCGCATACAAATGGGCCCCACCTACCACTTTGCCCTAAACAGTCTTCTCCCCCTCCTCCTTTCTTGGAGAAGATGAGCATCTCAGTGAATGGACAATCCCAGGTCCCTCCTGGCTTCCGGTTCCATCCAACCGAAGAGGAGCTGTTGCAGTACTACCTCAGGAAGAAGGTCTGCTACGAGAAGATCGACCTCGACGTTATTCGCGATGTCGATCTCAACAAGCTCGAGCCTTGGGACATACAAGAGAAGTGCAAAGTAGGAACCACCCCACAGAACGACTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCAACCGGAACTCGAACCAACCGAGCCACGGCGGCCGGATTCTGGAAGGCGACGGGACGTGACAAGGTGATATATAGCAACGGGAAGAGGATTGGAATGAGGAAGACTCTGGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAGTCTGATTGGATCATGCATGAGTACAGGCTTGAAGATAATAACTCTAGCATGGAGACCAGCATTGTGTCGAGTGTGATGGGGGATGGAACACAGGAGGAAGGGTGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTAAAAACCCTAGACAGCCCCTTGGCTTCATCCATTACAGGGGAAACCAGAAGGAGCGCCCACCACCCCGACCACGTCTTTGATTCTTGTGACGACGATGAGGGAGCTTTGGAGCAAATTCTTGAGCAAATGGGAAAGAGCGGCTGTAAGGAAGAAGAACAAAACGATCTCACCACCAACAACAACGGAAGAGCCGCCATATCATTCGACGACACGGTCGTCATCAACAACAGCAACAGCAACAACAACAATGGCTACTTCTACCATGACAGGTTCTTGAAGCTTCCTCGTTTAGAAAGCCCAAAATCCAATAATAATAATGGGTACCATCCTGTTGTTGAAGGGTCACTTGGTGGTGGTGACCCCAGCTTCGTTCATCATCATCATCATCATCCAATGGAAGCAGCATCATCTTCTGTCAATGGTGGTCTGATCACCAACTGGGCGGCACTGGATCGGCTCGTAGCTTCGCAGCTGAATGGTCAAACCGAGACTTCTAGGCACCTAGCCTGCTTCAATACCACTGTAGACCCTACCATGGAGTATTGCACTAGTGACCATGAACATCTGCAACTTCCGATTCCGACCCTTCGATCTTCATCATCTTCGTCAATAATATCATCGTCAACATCATCATCAGCACACAACAACAGGGCTAATTACGACTACACCAGTGAGATTGACCTCTGGAACTTTGCCCGATCAACATCATCGTTACTGTCAGGCTCGGAACCACTATGCCACGTGTCCAACTCGTCATCGATGTAG 1584 0.4937 MVVANGEAKGERERGVNLRIYGPNGGCLRGGFPWRFLRSGVIVVDVGVCPYSSSIFSPTTPHPPNFCGTLMCCPHTNGPHLPLCPKQSSPPPPFLEKMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVCYEKIDLDVIRDVDLNKLEPWDIQEKCKVGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEDNNSSMETSIVSSVMGDGTQEEGWVVCRIFKKKNHLKTLDSPLASSITGETRRSAHHPDHVFDSCDDDEGALEQILEQMGKSGCKEEEQNDLTTNNNGRAAISFDDTVVINNSNSNNNNGYFYHDRFLKLPRLESPKSNNNNGYHPVVEGSLGGGDPSFVHHHHHHPMEAASSSVNGGLITNWAALDRLVASQLNGQTETSRHLACFNTTVDPTMEYCTSDHEHLQLPIPTLRSSSSSSIISSSTSSSAHNNRANYDYTSEIDLWNFARSTSSLLSGSEPLCHVSNSSSM 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1217 527 ProSiteProfiles NAC domain profile. 108 269 IPR003441 GO:0003677|GO:0006355
Dere12g1217 527 Gene3D NAC domain 117 275 IPR036093 GO:0003677|GO:0006355
Dere12g1217 527 FunFam NAC domain-containing protein 117 273 - -
Dere12g1217 527 SUPERFAMILY NAC domain 100 269 IPR036093 GO:0003677|GO:0006355
Dere12g1217 527 MobiDBLite consensus disorder prediction 377 410 - -
Dere12g1217 527 Pfam No apical meristem (NAM) protein 109 236 IPR003441 GO:0003677|GO:0006355
Dere12g1217 527 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 106 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1217 Dere-ChrDere12 23096060 23098442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1217 96 525 NAC Transcription Factor Family AT2G46770 53.456 5.81e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere12g1217 NAM 1.1e-35 No_clan