Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1215 ATGGGGAAGAAGGGAGGTACCTCGTGGTTGACGGCTGTGAAAAGGGCATTTAGGTCTCCAACCAAAGACGCTGACAAAAGGAACCAAGAAGAAGACGAAGACAAGAGGAGAGAAAAACGACGATGGATTTTCAGAAAAACAGCGAATCACGACGCAACGGTGAGTTCCCAACAAACCCCCACAAAGGAGAACCCTGATTCGGCTGCAACAACGGTTGAACCTGTACACGTGCCGACAGCGGCGGCGTTGGTGACGGATCGGAAGAATGCGCTTGCGGCGGCGGTGGCGAAGGCGGAAGCGGCCAGGGCCACCGCTCAGGCAGCGGTGGAAGTTGCTAGAATGACGAGGCCTTCGAATCAAGCTAGGGAGGACTATGCTGCAGCTGCTACGGTGATTCAAACTGCTTTCAGAGGATACCTAGCAAGGAGGGCACTGCGAGCGCTTAAGGGATTGGTGAAATTGCAAGCTTTGGTAAGGGGTCATAATGTTCGGAAGCAGGCAAAGATGACTCTTCGGTGCATGCAGGCTCTGGTTCGTGTACAAGCCAGAGTGCTTGACCAGCGCTTGAGGTTCTCACACGAAAGCAGTAGTAGAAAATCCACATTCAGTGATACCAATAGCGTTTGGGAATCACGATATCTTCAGGATATTTCTGATAGGAAATCAATGTCAAGAGAGGGAAGTAGTATTGCAGATGACTGGGATGAACGCCCACACACAGTTGAGGAAGTCAAGGCGATGTTGCAGCAGAGGAAAGAAGCAGCTATGAAGCGAGACAAGTCCATATCTCAAGCTTTCTCCCAACAGATTTGGAGGAATGGTAGGAACTCATCGATTGGAAATGAAGAAGAACTGGAAGAAAGACCCAAATGGCTCGACCGGTGGATGGCTTCGAAGCCATGGGAGACCAGAGGAAGAGCTTCAACCGATCAAAGAGACACCATTAAAACTGTAGAAATTGACACTTCTCAACCTTACTCATATCTAGGATCTAACTACAGAAGATCACATCCAAATTATCAATATAACCCACCCCAACCCCAAAGACATTCAGTAGCTTCCCCAATCCACAGAACGCACCAAAATGTTTCTATTCACCAATCCCCTGCAACCCCATCTCCTGCAAAATCAAGGCCTATCCAAGTTCGGTCTGCCAGCCCTCGTTGTGGTAGAGAAGACAGAAGCTACAATACATCTCAAACACCAAGCTTGAGGTCCAATTACCATTATACTGGAGGCTTGTACCAAAATGGAAGGGTTGGTACAAGTAATGGTAGTGGGGCTACATTGCCTAATTACATGGCTGCAACGGAGTCTGCAAAGGCTCGACTTCGGTCTCAGAGTGCGCCGAGGCAGAGGCCGTTGACGCCAGAGAGGGACAGAGCAGGGTCAGCAGCAAGGAAGCGGCTTTCATTCCCTACTGCACCAGACCCTTATGCTGCTGCAAAGGGTTATGGAAGTTATGGACATAGTTTAAGAAGTCCAAGCTTCAAGAGTGTGAGTGCTTCACACTTTGGGTTGGAGCAGCATTCCAACTATTCTTCCTGCTGCACTGAGAGTCTTGGTGGTGAGATTTCTCCATCTTCAACTGGTGACCTAAGGAGGTGGTTGAGATGA 1617 0.4929 MGKKGGTSWLTAVKRAFRSPTKDADKRNQEEDEDKRREKRRWIFRKTANHDATVSSQQTPTKENPDSAATTVEPVHVPTAAALVTDRKNALAAAVAKAEAARATAQAAVEVARMTRPSNQAREDYAAAATVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRLRFSHESSSRKSTFSDTNSVWESRYLQDISDRKSMSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKSISQAFSQQIWRNGRNSSIGNEEELEERPKWLDRWMASKPWETRGRASTDQRDTIKTVEIDTSQPYSYLGSNYRRSHPNYQYNPPQPQRHSVASPIHRTHQNVSIHQSPATPSPAKSRPIQVRSASPRCGREDRSYNTSQTPSLRSNYHYTGGLYQNGRVGTSNGSGATLPNYMAATESAKARLRSQSAPRQRPLTPERDRAGSAARKRLSFPTAPDPYAAAKGYGSYGHSLRSPSFKSVSASHFGLEQHSNYSSCCTESLGGEISPSSTGDLRRWLR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1215 538 Gene3D - 120 184 - -
Dere12g1215 538 MobiDBLite consensus disorder prediction 518 538 - -
Dere12g1215 538 MobiDBLite consensus disorder prediction 391 410 - -
Dere12g1215 538 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Dere12g1215 538 MobiDBLite consensus disorder prediction 49 68 - -
Dere12g1215 538 MobiDBLite consensus disorder prediction 18 47 - -
Dere12g1215 538 MobiDBLite consensus disorder prediction 438 476 - -
Dere12g1215 538 MobiDBLite consensus disorder prediction 318 380 - -
Dere12g1215 538 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Dere12g1215 538 PANTHER IQ-DOMAIN 5-RELATED 1 474 - -
Dere12g1215 538 Pfam IQ calmodulin-binding motif 127 146 IPR000048 GO:0005515
Dere12g1215 538 Pfam IQ calmodulin-binding motif 152 168 IPR000048 GO:0005515
Dere12g1215 538 FunFam IQ-domain 11 123 175 - -
Dere12g1215 538 MobiDBLite consensus disorder prediction 301 317 - -
Dere12g1215 538 Pfam Protein of unknown function (DUF4005) 386 487 IPR025064 -
Dere12g1215 538 SMART iq_5 124 146 IPR000048 GO:0005515
Dere12g1215 538 SMART iq_5 147 168 IPR000048 GO:0005515
Dere12g1215 538 MobiDBLite consensus disorder prediction 301 410 - -
Dere12g1215 538 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1215 Dere-ChrDere12 23073720 23075838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1215 9 538 IQD Protein Family AT4G00820 59.890 0.0 533