Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1207 ATGGACGATTTGATTATCTCTCCTTCTTCTTCTTCTCCTCCTTTGGTCTCCCTGCACCGACAAACCCACCCAACTCTTCAGCAAAACCTTCAACTTTTACTCCAGAGTCAGCCCGACTGGTGGGTCTATGCCATTTTCTGGCAGATTTCAAACGACGACGTTAATGGCAATCTCTTCTTGTCCTGGGGTGAAGGCCACTTCAATGGCACCAAAGACACCTCCCCTAGACTCTCTAGTTCCGCCGGCATCAACAATAGTACCCCCACCCACCATTACCCAGACCTCCATTCCGAGAGAACGAGGTTCCTCAACGGCATCCAATCCCTCGTCAACGACGACAATAGCAGCAACATTTTCAGCGACCTCCTTGACACCGAGTGGTTTTATGTCATGTCGTTGACTCGAACTTTCTCTGTCACTTCTTCTTCTTCTTCTTCAGCTGCTGCAGCTTCCCTCCCTGGCAAAGCCTTCGCTTCTGGTTCTCTGCTCTGGCTAAACGGCGAGCACGAGCTTCAACTCTGCAATTGCGAGAGAGCGAAAGAGGCTTACTTGCATGGAATTGAAACTCTGATCTGCATCCCCACCAGTCATGGAGTTCTCGAAATGGGTTCCTCCGATCTCATCGCAGAAAACTGGGGTCTCGCACAAGCAGCCAAAGCTCTATTCGGGTCGGAACTTATCAACAAGCAACCAAGCAACAACCTGATTCAATTCTTCGACGACCAGAACATCTCCTTCGCCGACATCGGCATTATCGCCGGCGTACAAGAAGAAGACGACAATGCCCACGTACCCGACAACAACAACGCAAGGAAGAATGACAAGAAGAGGGCAGAACAGAGGACCAAGACAAATTCCGGCATCAAATTCGGGTACGCTGATTCGGAGCATTCCGATTCCGATTGCAATCGTTCAATAGAGAAAGGACCCCCAAAGAAGAGAGGAAGAAAACCCGGTCTGGGCCGCGAAACGCCGTTGAACCACGTGGAGGCAGAGCGGCAGCGGCGGGAGAAGCTGAACCACCGGTTCTACGCACTTCGCGCGGTGGTTCCGAACGTGTCGAGAATGGACAAGGCTTCCCTGTTATCAGACGCCGTCGATTACATCAACGAGCTGAAATCGAAGATCGAGGAATTGGAATCGCAGATTCAGAGAGAGACGAACAACAGCAACAACAATAATAATAACAACAACAACAGGAAGGTGAAATTGGAAATGGCGGACGCTACGGACAACCAGAGCACGATGACTTCGACGGTGGACCAAACGACGTCGCCGGGGGCGCCTAATGCTTCAGGCATTGAGGTTGAGGTTAGGATCATAGGATCGGAGGCCATGGTTCGGGTTCAATCGGAGAACGCGAACCACCCAGGCGCGAGGCTAATGGGTGCGTTTCGAGACTTGGAGCTAGGGGTGCACCATGCGAGCATGTCGTGCGTGAATGAGCTGATGCTTCAGGACGTGGTGGTTAAGATTCCTGAGGACCTGAGAAACGATGAGGCTCTGCAATCTGCGATTCTGAGGAGATTGTGTCCCTAA 1539 0.5166 MDDLIISPSSSSPPLVSLHRQTHPTLQQNLQLLLQSQPDWWVYAIFWQISNDDVNGNLFLSWGEGHFNGTKDTSPRLSSSAGINNSTPTHHYPDLHSERTRFLNGIQSLVNDDNSSNIFSDLLDTEWFYVMSLTRTFSVTSSSSSSAAAASLPGKAFASGSLLWLNGEHELQLCNCERAKEAYLHGIETLICIPTSHGVLEMGSSDLIAENWGLAQAAKALFGSELINKQPSNNLIQFFDDQNISFADIGIIAGVQEEDDNAHVPDNNNARKNDKKRAEQRTKTNSGIKFGYADSEHSDSDCNRSIEKGPPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIEELESQIQRETNNSNNNNNNNNNRKVKLEMADATDNQSTMTSTVDQTTSPGAPNASGIEVEVRIIGSEAMVRVQSENANHPGARLMGAFRDLELGVHHASMSCVNELMLQDVVVKIPEDLRNDEALQSAILRRLCP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1207 512 MobiDBLite consensus disorder prediction 259 283 - -
Dere12g1207 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 385 IPR036638 GO:0046983
Dere12g1207 512 CDD bHLH_AtAIB_like 321 385 - -
Dere12g1207 512 MobiDBLite consensus disorder prediction 258 334 - -
Dere12g1207 512 PANTHER MYC 21 509 IPR045084 GO:0003700|GO:0006355
Dere12g1207 512 SMART finulus 329 378 IPR011598 GO:0046983
Dere12g1207 512 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 222 IPR025610 -
Dere12g1207 512 Coils Coil 362 412 - -
Dere12g1207 512 MobiDBLite consensus disorder prediction 71 90 - -
Dere12g1207 512 MobiDBLite consensus disorder prediction 294 334 - -
Dere12g1207 512 Gene3D - 322 389 IPR036638 GO:0046983
Dere12g1207 512 Pfam Helix-loop-helix DNA-binding domain 327 372 IPR011598 GO:0046983
Dere12g1207 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1207 Dere-ChrDere12 22948739 22950277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1207 10 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 33.733 3.99e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere12g1207 bHLH-MYC_N 2.3e-46 CL0161