LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere12g1202	ATGTTAGGTCATAGTGAATACTCTCGTTCTGCTGAAACGTACAGCAGCACAATAACTGCTTCATCTTCATCATCATCCCCATCAGCGAGCTTGAGGAAGAAGAAGAGCAAAAACAAGAGAAGGTTCAGTGAGGAGCAACTCAAGTCTCTGGAGTCCATGTTCGACACAGAGTCGAGGGTTGAACCCAGAAAGAAGGTGGAACTGGCTAGAGAGCTCGGCTTGCAGCCACGCCAGGTGGCCATATGGTTCCAGAACAGGCGAGCTCGATGCAAGTCCAAGCAGCTCCAACGAGACTACTCCATTCTCCGAGCCAATTACAACACTTTGGCTTCCAAATTCGACGCCCTCAAGAAGGAGAATCACTCATTACTAACACAGTTGCAGAAGCTGAATGAAGTAGTGCAAAATCCAGAAGATCAAACTCGTTGTCGTAAGAAAGTGGAAGTTGCAAATTGCTTGGATAGAGAGTCAGATAATGGAGAAACCATCAGATGTGAAGCAGAGGTGATGCTTAGCCCATCAATGGAAAGATCAGAGCATGTGCTTGGGGTTCTTTCAGATGATGATAGCAGCATAAAGGCAGAGTATTTTGGCCTCGAAGATGAACTTACCCTTATCAACTTCGTTGATCAGTGTACTGATGGTTCTTTAACATCACCAGAAGATTGGGGAAACCTTGAATCTGATGACCTCTTAGCCCAGACTGATAGTGGTTATCAATGGTGGGACTTCTGGTCCTGA	741	0.4588	MLGHSEYSRSAETYSSTITASSSSSSPSASLRKKKSKNKRRFSEEQLKSLESMFDTESRVEPRKKVELARELGLQPRQVAIWFQNRRARCKSKQLQRDYSILRANYNTLASKFDALKKENHSLLTQLQKLNEVVQNPEDQTRCRKKVEVANCLDRESDNGETIRCEAEVMLSPSMERSEHVLGVLSDDDSSIKAEYFGLEDELTLINFVDQCTDGSLTSPEDWGNLESDDLLAQTDSGYQWWDFWS	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere12g1202	246	Coils	Coil	85	105	-	-
	Dere12g1202	246	Coils	Coil	113	133	-	-
	Dere12g1202	246	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	32	159	IPR045224	GO:0003700
	Dere12g1202	246	CDD	homeodomain	42	94	IPR001356	GO:0003677
	Dere12g1202	246	ProSitePatterns	'Homeobox' domain signature.	68	91	IPR017970	GO:0000981\|GO:0006355
	Dere12g1202	246	FunFam	Homeobox-leucine zipper protein ATHB-7	20	93	-	-
	Dere12g1202	246	Coils	Coil	33	53	-	-
	Dere12g1202	246	MobiDBLite	consensus disorder prediction	8	31	-	-
	Dere12g1202	246	PRINTS	Lambda-repressor HTH signature	64	73	IPR000047	GO:0003677
	Dere12g1202	246	PRINTS	Lambda-repressor HTH signature	73	89	IPR000047	GO:0003677
	Dere12g1202	246	Gene3D	-	11	92	-	-
	Dere12g1202	246	MobiDBLite	consensus disorder prediction	1	48	-	-
	Dere12g1202	246	SUPERFAMILY	Homeodomain-like	15	94	IPR009057	-
	Dere12g1202	246	SMART	HOX_1	35	97	IPR001356	GO:0003677
	Dere12g1202	246	ProSiteProfiles	'Homeobox' domain profile.	33	93	IPR001356	GO:0003677
	Dere12g1202	246	Pfam	Homeobox associated leucine zipper	93	134	IPR003106	GO:0006355\|GO:0043565
	Dere12g1202	246	Pfam	Homeodomain	37	91	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere12g1202	Dere-ChrDere12	22806175	22807080	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere12g1202	41	246	Homeobox Transcription Factor Family	AT3G61890	51.659	1.68e-58	184

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Dere12g1202		Homeodomain	1.2e-16	CL0123