Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1190 ATGATGGTAGTAGATGTATTGTCTAGTGCCACTTCCGGTCCTTTTTCAGAAGTTATTTCTCAGCTTATAGATGCTATTTTTGAGCTTGTAAATTCTGCTACCGATGTTCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTATGTAGAAAGAATTGTACCCATCTTAAAAGAATTGAGGAAGAAGAAAGTCAGCAATATTGAGACATTCAACCACACCATTGAGATTTTGAATCGTGAAATTGGAGATGCAAATAAACTGACTCTAGAATGCAGCAAGAGGAATAAGGTCTATCTCTTATTGAACTGCCGGTCTATTTCTAAGCGTCTAAAGAAAAACACAAGTGAGATCAGCCGTGCTCTTGGTTATATTCCTCTCGTTACCCAAGATCTTTCTGCTGGAATAATTGAAGAAATTGAAAATCTCTGTGACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATTGCAGAAGAGGAGATTTTGGAGAAAATTGAGTCAGGGATACAAGAAAAGAATGTTGATCGCTCTTATGCCAATAATTTGCTGATGCTCATTGCAGAGGCTGTTGGCATAACGAATGAGAAGTCAACAATGAAGAAGGAACTGGAAGAATTTAAGAGCGAAGTTGAAAATGCCCGACTAAGGAAGGACCTGGCTGAAGCTATACAAATGGATCAGATCATAGCTTTGCTTGAAAGGGCTGATGCAGCCTCTTCACCAAAGGAAAAGGAACTGAAATACTTTGCAAAACGCAAATCTTTAGGAAGTCAACCCTTAGAGCCTCTTCACTCATTTTATTGCCCCATCACCCGGGATGTTATGGAGGACCCTGTTGAAACTTCGTCAGGGCAGACATTTGAGAGAAGCGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGTCCTCTGACCATAACTCCCTTAAATACATCAATTTTGAGACCTAACAAAACCTTGAAACAATCGATAGAAGAATGGAAAGATAGGAACACTATGATTACAATTGCTTCAATGAAGGAAAAAATCCAGTCTGGAGAAGATGATGAAGTCCTGCATTGTCTGGGAACTCTACAGGATTTGTGTGAACAAAAAGATCAGCATAGGGAATGGATGATGTTAGAGAATTACATACCACTTCTTATCCAGGTTCTTGGTTCCAAAAATCGTGACATAAGGAATCAAGCTCTGTTCATCCTTTGCATGTTAGCTAAGGATAGTGATGACGCTAAGGAAAGAATTACAAATGTTGATAATGCAGTTGAATTGATTGTCCGTTCTCTTGGGCGTCGTGTGGAGGAAAGGAAGTTGGCAGTGGCATTATTGTTGGAATTATCCAAGTATGACATGTTACGAGAATACATTGGAAAGGTTCAAGGTTGCATATTACTATTAGTGACTATGTCTAGCAGTGATGACAATCAAGCTGCAAGAGATGCTACTGAACTACTGGAGACTCTTTCATATACTGATCAGAATGTTTTGCAGATGGCAAAGGCAAATTATTTCAAGCATTTGTTGCAGCGTCTCTCCACAGGACCAGATGATGTAAAAATGAACATGGCAACAACTCTAGCAGAAATGGAGTTAACTGACCACAATAAAGAGTCTCTGTTTGAAGGTGGTGTGCTGGATCCTCTTCTTCACTTGGTCTCATATGGTGAGCCTCAGGTGAAAACAGTGGCTCTTAGAGCCCTTCGGAATCTATCCTGTTTAAAGAAAAATGGACTAGAAATTATTCGGCAAGGAGCAGTGCGCCCATTATTTGGCCTTCTTTTCAATCACTGTGTGCCACCCTCAAGTTTGCAAGAACATGTAGCTGCCATAATCATGCAACTTGCTGAAGCAACCATTGCTCAAGATACCCAGACACCAGTTTTATTATTCGAATCTGATGACGATGTTTTTAACCTCTTCTCCTTAATTAGATTCTCAGTGCCTGATGTACAACAAAACATTATCAAGGGCTTTTGTGCTTTGTGTCAGTCCACATCAGCTGCATATATCAAGACCAAGCTAAAAGAGTGCTCTGCTATTCAAGTGTTGGTTCATTTGTGTGAGAATGAAAACCTAAATCTACGAGCAAGTGCTGTAAAGCTATTGTCTTGCTTGGTAGAAAGCTGTGATGAAGCTAGCATCCTGGAGAATGTAAACCAGAAGAGCATCAAGAATTTACTACAGATCCTTAGATCATCTTCTGATGGAGAGGAAATTGCTTCTGCTATGGGCATAATATACTATCTTCCAGAAATCTCCCAAATCACTCAATGGCTTCTAGATGATGGTATACTGCCAATCATTTATAAGTACATCCAAGAATGTAGGGACAAAGATCTCCAAAAGAATAATTTAGTAGAGAATTCTTTAGGTGCTCTACGTCGTTTCACAGTTCCAACAAACTTGGAATGGCAGAAAAGTGCAGCAGAAACTGGGATTATAACTGTTTTAGTACAGTTGCTCGGATATGGGACCTCATTGTCAAAACAACATGCAGCGTTGTGTCTTACTCAATTTTCAAAGAGTTCACTTGGGTTGAGCAGGCCAATTCCCAAGCACAAGGGACTCTGGTGCTTCTCAGCTCCAGCAGAAATTGGCTGCCCTGTTCATGGAGGAATCTGTACTGTCAAGTCATCATTTTGCCTTTTGGAGGCTGATGCAGTGGGACCTCTAACAAGGACTCTCTGGGAATCTGATCCTGGAGCTTGTGAGGCTTCTTTAGATGCACTCCTGACTTTGATTGAAGGTGAGAGACTGCAGAGTGGTTGTAAAGTGCTTGAAGCAGCAAATTCCATACCAGCAATAATAAAATTTCTTGGCTCCAATTCCCCCCCATTGCAGGAGAAATCTCTTCATGCTTTGGAAAGGATTTTTCGGTTGATTGAGTTCAAACAGAAGTATGGAGCCTCAGCCCAAATGCCTCTAGTTGACTTAACTCAGCGGGGTAATGGTAGCATGAGATCAATGGCAGCTAGAATATTGGCACATCTAAATGTGCTTCATGATCAGTCCTCTTATTTCTGA 3024 0.4058 MMVVDVLSSATSGPFSEVISQLIDAIFELVNSATDVLVKKDSFKELAAYVERIVPILKELRKKKVSNIETFNHTIEILNREIGDANKLTLECSKRNKVYLLLNCRSISKRLKKNTSEISRALGYIPLVTQDLSAGIIEEIENLCDNMQKAEFKAAIAEEEILEKIESGIQEKNVDRSYANNLLMLIAEAVGITNEKSTMKKELEEFKSEVENARLRKDLAEAIQMDQIIALLERADAASSPKEKELKYFAKRKSLGSQPLEPLHSFYCPITRDVMEDPVETSSGQTFERSAIEKWFAEGNKLCPLTITPLNTSILRPNKTLKQSIEEWKDRNTMITIASMKEKIQSGEDDEVLHCLGTLQDLCEQKDQHREWMMLENYIPLLIQVLGSKNRDIRNQALFILCMLAKDSDDAKERITNVDNAVELIVRSLGRRVEERKLAVALLLELSKYDMLREYIGKVQGCILLLVTMSSSDDNQAARDATELLETLSYTDQNVLQMAKANYFKHLLQRLSTGPDDVKMNMATTLAEMELTDHNKESLFEGGVLDPLLHLVSYGEPQVKTVALRALRNLSCLKKNGLEIIRQGAVRPLFGLLFNHCVPPSSLQEHVAAIIMQLAEATIAQDTQTPVLLFESDDDVFNLFSLIRFSVPDVQQNIIKGFCALCQSTSAAYIKTKLKECSAIQVLVHLCENENLNLRASAVKLLSCLVESCDEASILENVNQKSIKNLLQILRSSSDGEEIASAMGIIYYLPEISQITQWLLDDGILPIIYKYIQECRDKDLQKNNLVENSLGALRRFTVPTNLEWQKSAAETGIITVLVQLLGYGTSLSKQHAALCLTQFSKSSLGLSRPIPKHKGLWCFSAPAEIGCPVHGGICTVKSSFCLLEADAVGPLTRTLWESDPGACEASLDALLTLIEGERLQSGCKVLEAANSIPAIIKFLGSNSPPLQEKSLHALERIFRLIEFKQKYGASAQMPLVDLTQRGNGSMRSMAARILAHLNVLHDQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1190 1007 SUPERFAMILY RING/U-box 254 334 - -
Dere12g1190 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1007 - -
Dere12g1190 1007 Pfam Armadillo/beta-catenin-like repeat 533 571 IPR000225 GO:0005515
Dere12g1190 1007 Coils Coil 189 223 - -
Dere12g1190 1007 Gene3D - 16 130 IPR036537 GO:0007166
Dere12g1190 1007 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Dere12g1190 1007 Coils Coil 140 160 - -
Dere12g1190 1007 Gene3D - 629 1005 IPR011989 -
Dere12g1190 1007 CDD RING-Ubox_PUB 266 315 IPR045210 -
Dere12g1190 1007 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Dere12g1190 1007 SUPERFAMILY ARM repeat 533 842 IPR016024 -
Dere12g1190 1007 SUPERFAMILY ARM repeat 788 997 IPR016024 -
Dere12g1190 1007 Gene3D - 341 628 IPR011989 -
Dere12g1190 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 340 IPR013083 -
Dere12g1190 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Dere12g1190 1007 SUPERFAMILY ARM repeat 336 615 IPR016024 -
Dere12g1190 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Dere12g1190 1007 SMART arm_5 408 448 IPR000225 GO:0005515
Dere12g1190 1007 SMART arm_5 366 406 IPR000225 GO:0005515
Dere12g1190 1007 SMART arm_5 573 616 IPR000225 GO:0005515
Dere12g1190 1007 SMART arm_5 532 572 IPR000225 GO:0005515
Dere12g1190 1007 SMART arm_5 667 707 IPR000225 GO:0005515
Dere12g1190 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Dere12g1190 1007 CDD MLKL_NTD 19 122 - -
Dere12g1190 1007 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1190 Dere-ChrDere12 22615913 22627771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1190 265 1007 U-box Gene Family AT1G20780 28.517 3.44e-58 213