Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere12g1187 | ATGCTTAGAGCAAGTTGGGTTGCAACTGAATTCTGGGCCCATGTATCAAAACCTTTCCCAAGGGACTTTGCTTTAATTGATGTTTCTAAAGCTATTAGTGGTTGGAGTCCCCCTTTGACTGAAATTAAGGCTTGTCTTAAGGGTTTAGGAATGGTGCTAGACTTAGGTGTATTTGATCTGATTGGCTTTGTTATATTTTGGCCTGCCCACAGTATAAAAGTCGCCACCCCGTTCAGCAAGGCACTCTCTGTTACGAAGCTTTCTGGGAAGGGCAACAAATTCGAGCTTTTCAGGCTATTTGAAGGCATACTTTCGAAGATGAGGCCGGTGTTTGTTGGGAACTTTGAGTACGATACCCGTCAATCGGAGCTTGAGCGCTTGTTCGCTAAGTATGGCAGGATTGAACGCGTGGACATGAAATCTGGTTTTGCCTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGATGCAATCCGTGCACTTGACAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGCGAGCGAGGACGTCATCGCGATGGGTCCAGAGCAAACCAGAGGCCAACAAAAACTTTATTTGTGATTAACTTTGACGCAATTCGTACGAGAGTTCGTGATATAGAGAGACACTTTGAACCTTATGGGAAGGTTCTTCATGTTCGGATTCGTCGGAATTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATACTGGATAGAGTGGTTTCAGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGAGACAGATATTATGACAGTCCCAGAAAAGGGGGTTATGGAAGATCACCCAGTCCAATTCCTCGTAGGCGATCAAGTCCTGATTATGGTCGCCCACGCAGTCCCATATATGATAGGTACAATGGACCAGCATATGACAGGCGTAGGAGCCCTGATTATGGTAGGCCAAGGAGTCCTGATTATGGTAGACACAGAAGTCCTGAATATGGTAGATACCGCAGCCGTTCACCAATCCGAAGGTCAAGGACATGA | 1071 | 0.4556 | MLRASWVATEFWAHVSKPFPRDFALIDVSKAISGWSPPLTEIKACLKGLGMVLDLGVFDLIGFVIFWPAHSIKVATPFSKALSVTKLSGKGNKFELFRLFEGILSKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDAIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRKGGYGRSPSPIPRRRSSPDYGRPRSPIYDRYNGPAYDRRRSPDYGRPRSPDYGRHRSPEYGRYRSRSPIRRSRT | 356 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere12g1187 | 356 | MobiDBLite | consensus disorder prediction | 272 | 356 | - | - | |
Dere12g1187 | 356 | Gene3D | - | 104 | 190 | IPR012677 | - | |
Dere12g1187 | 356 | MobiDBLite | consensus disorder prediction | 315 | 348 | - | - | |
Dere12g1187 | 356 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 197 | 348 | - | - | |
Dere12g1187 | 356 | CDD | RRM1_AtRSp31_like | 108 | 179 | - | - | |
Dere12g1187 | 356 | SMART | rrm1_1 | 198 | 264 | IPR000504 | GO:0003723 | |
Dere12g1187 | 356 | SMART | rrm1_1 | 109 | 176 | IPR000504 | GO:0003723 | |
Dere12g1187 | 356 | Gene3D | - | 191 | 277 | IPR012677 | - | |
Dere12g1187 | 356 | FunFam | Serine/arginine-rich splicing factor RS31 | 191 | 279 | - | - | |
Dere12g1187 | 356 | CDD | RRM2_AtRSp31_like | 198 | 267 | - | - | |
Dere12g1187 | 356 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 110 | 166 | IPR000504 | GO:0003723 | |
Dere12g1187 | 356 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 200 | 261 | IPR000504 | GO:0003723 | |
Dere12g1187 | 356 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 108 | 180 | IPR000504 | GO:0003723 | |
Dere12g1187 | 356 | FunFam | Serine/arginine-rich splicing factor RS31 | 107 | 190 | - | - | |
Dere12g1187 | 356 | SUPERFAMILY | RNA-binding domain, RBD | 108 | 269 | IPR035979 | GO:0003676 | |
Dere12g1187 | 356 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 197 | 268 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere12g1187 | Dere-ChrDere12 | 22593006 | 22598058 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere12g1187 | 106 | 305 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 23.077 | 4.74e-09 | 55.8 |