Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1187 ATGCTTAGAGCAAGTTGGGTTGCAACTGAATTCTGGGCCCATGTATCAAAACCTTTCCCAAGGGACTTTGCTTTAATTGATGTTTCTAAAGCTATTAGTGGTTGGAGTCCCCCTTTGACTGAAATTAAGGCTTGTCTTAAGGGTTTAGGAATGGTGCTAGACTTAGGTGTATTTGATCTGATTGGCTTTGTTATATTTTGGCCTGCCCACAGTATAAAAGTCGCCACCCCGTTCAGCAAGGCACTCTCTGTTACGAAGCTTTCTGGGAAGGGCAACAAATTCGAGCTTTTCAGGCTATTTGAAGGCATACTTTCGAAGATGAGGCCGGTGTTTGTTGGGAACTTTGAGTACGATACCCGTCAATCGGAGCTTGAGCGCTTGTTCGCTAAGTATGGCAGGATTGAACGCGTGGACATGAAATCTGGTTTTGCCTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGATGCAATCCGTGCACTTGACAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGAGGCGAGCGAGGACGTCATCGCGATGGGTCCAGAGCAAACCAGAGGCCAACAAAAACTTTATTTGTGATTAACTTTGACGCAATTCGTACGAGAGTTCGTGATATAGAGAGACACTTTGAACCTTATGGGAAGGTTCTTCATGTTCGGATTCGTCGGAATTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATACTGGATAGAGTGGTTTCAGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGAGACAGATATTATGACAGTCCCAGAAAAGGGGGTTATGGAAGATCACCCAGTCCAATTCCTCGTAGGCGATCAAGTCCTGATTATGGTCGCCCACGCAGTCCCATATATGATAGGTACAATGGACCAGCATATGACAGGCGTAGGAGCCCTGATTATGGTAGGCCAAGGAGTCCTGATTATGGTAGACACAGAAGTCCTGAATATGGTAGATACCGCAGCCGTTCACCAATCCGAAGGTCAAGGACATGA 1071 0.4556 MLRASWVATEFWAHVSKPFPRDFALIDVSKAISGWSPPLTEIKACLKGLGMVLDLGVFDLIGFVIFWPAHSIKVATPFSKALSVTKLSGKGNKFELFRLFEGILSKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDAIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRKGGYGRSPSPIPRRRSSPDYGRPRSPIYDRYNGPAYDRRRSPDYGRPRSPDYGRHRSPEYGRYRSRSPIRRSRT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1187 356 MobiDBLite consensus disorder prediction 272 356 - -
Dere12g1187 356 Gene3D - 104 190 IPR012677 -
Dere12g1187 356 MobiDBLite consensus disorder prediction 315 348 - -
Dere12g1187 356 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 197 348 - -
Dere12g1187 356 CDD RRM1_AtRSp31_like 108 179 - -
Dere12g1187 356 SMART rrm1_1 198 264 IPR000504 GO:0003723
Dere12g1187 356 SMART rrm1_1 109 176 IPR000504 GO:0003723
Dere12g1187 356 Gene3D - 191 277 IPR012677 -
Dere12g1187 356 FunFam Serine/arginine-rich splicing factor RS31 191 279 - -
Dere12g1187 356 CDD RRM2_AtRSp31_like 198 267 - -
Dere12g1187 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 166 IPR000504 GO:0003723
Dere12g1187 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 261 IPR000504 GO:0003723
Dere12g1187 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 180 IPR000504 GO:0003723
Dere12g1187 356 FunFam Serine/arginine-rich splicing factor RS31 107 190 - -
Dere12g1187 356 SUPERFAMILY RNA-binding domain, RBD 108 269 IPR035979 GO:0003676
Dere12g1187 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 268 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1187 Dere-ChrDere12 22593006 22598058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1187 106 305 Eukaryotic Initiation Factors Gene Family AT1G49760 23.077 4.74e-09 55.8