Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1183 ATGAATTTTTGCTACGATATGGATGGCGGGGCCTTGGATTTGGGTTCATTGCCTCCAACCATAGTGCTTGAATGTAGATACCAATTGCTATCGAGCAGAATGCATTCTGGGATTATATTGGCATCGCTAGGAAAGAATGGAACTGGGACAAAGGAGCCTCCTGAGTTCGAGAAGGAATATGCAGAGAAAGATCCAGCTGGCCGATATATTCGGTACAATGATATCTTAGGCAAGGGAGCTTTCAAGACTGTTTATAGGGCCTTTGATGAAGTTGATGGAATGGAGGTTGCTTGGAACCAGGTTAGGTTTCATGACCTTTTGCAGTCAGCAGTAGATCGAGCAAAACTGCATTCTGAAGTTTGCATATTGAAGTTTTTAAAACATGAAAATATTATTAAGTACTATGATTCCTGGATTGATGATAAGAATAGCAGTATTAACATGATCACGGAGCTCTTCACATCTGGAACTCTAAGGCAATATCGTAAGAAGCATAAAAATGTTGACACAAAGGCCATAAAAGGTTGGGCTTGGCAGATTCTCAGAGGTTTAGCCTATATGCACAGTCAAAAGCCACCTATCATTCATAGAGACTTGAAATGTGACAATATCTTTGTGAATGGAAACCATGGAGAAGTTAAGATAGGAGACCTAGGCTTGGCAATCGTCATGCAGCAGCCAACTGCTCAAAGCGTCATTGGGACTCCTGAGTTTATGGCTCCTGAGCTTTATGATGAGGAATACAATGAGCTTGTTGACATATATTCTTTTGGGATGTGCATATTGGAGATGGTTACTTTTGAGTATCCCTTTAGTGAATGCAAAAATCCAGCTCAAATCTATAAGAAAGTTACCTCTGGCATCAAACCTGCTTCTCTTCTTAGGGTGAGTGACCCTCAAATTAGAGAGTTTATTGAAAAATGTCTGGTTCCAGCATCCCAGAGATTGTCTGCACAGGAGCTTCTCAAGGACCCATTTCTGCAAGTTGAGAATCCAAAGATTCCTATCCGAGATCCCTTACAGTTGCCTTCTCAAGCCCCAAAATCTATTAATTTATCCAAGTCTGGTCCTTCATCTATGGACATAGATGCTGACTACAAACAGATTTTGATGAGTACATATGCTGAAAACAATTGTGGAAGTCCACAATCTCTGATTCTAGAATTACGAGGGATATTTCAGGAGAAAGAGTTCGGGTTGAGAGGGACAAAAAATGATGATAAATCTGTATCGTTGACCTTACGTATTGTTTATCTATATGGTCGAGTGAAGAAGATACATTTTCTCTTTTACCTTGATACAGATACTGCAGTCTCAGTGGCCTCAGAAATGGTTGAAGAATTGGAGTTAGCAGAACATGATGTGACCTTCATAGCTGAGCTTATTGATCATTTGATCATGGAACTTTTCATTGGGTGGATGCCCTCATCTGATTATTCTTCAATTAAAGGGATTAGTTTCAATGGTGGGTCCCCAAAGGTTGTAGATGAGCAAACCATAACAAGCCCATGGGATTCCGTCCTAGCTAGTGTTCCAGCTGGATTAATTATTGAGCAAGATGTTGTATCAAGGTCAAATATCACTACTCAAGAAGTTTTGGTCACACCTGAGGCGGGCTTCTTAAATGATAGCGCTTGTAATAATGCTAAGTTGCAAGGTGAGTATAATTCTTCTTCCATCTTGGTTGACTTGGAATATCAGTATTCACAAGGATCTGCAACCTCTGAAGTTGTTATTGAAGATGCATCCATGAAAAATGACAACTCTCCTGAGGAGGGCTTCTTGCGAGATGACATTGATAATAATGCTACTTTGAAAAGCTTCTATAATTCTTCTCCTAGTTCGGTTAACATGGAATATCAATATTCACAAGGATCTGCAACCACTGAAATAGCTGTGGAAGATGCATCTATGAGAAATGACAACTTTCTCGATTTCAATTTTGATGGGAGTTCTAAATGCTTAAGTTGGTCCGTCTCTGAACTGGAGCTTGGGGATATAGATTTTGAGGCTGGCAAGTTTCAGAGAATTACGGATCGCTATGTCAGAGAAGGCATTGTGATAAACAACTTTACAAAGAACAGAACAATCCCAGCATTTAGCGGAACATCTAATGCTTTTAGCTTGACAAGCAGTAGTTCTTCTCTGTCTTTAGTAGACGAGAACATAGATTCCGGGCTAAAGTCAGAACTTGAGGCAATCGAGGCAGAATATCAACGTAGGTATGAAGATCTTTCTAGAAGGAAGTTGAAGGAAGTGGAATCCGCCACAAGGAGATGGATGGCCAAGAAGAAATTGGCTGTTCATTGA 2310 0.4026 MNFCYDMDGGALDLGSLPPTIVLECRYQLLSSRMHSGIILASLGKNGTGTKEPPEFEKEYAEKDPAGRYIRYNDILGKGAFKTVYRAFDEVDGMEVAWNQVRFHDLLQSAVDRAKLHSEVCILKFLKHENIIKYYDSWIDDKNSSINMITELFTSGTLRQYRKKHKNVDTKAIKGWAWQILRGLAYMHSQKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYDEEYNELVDIYSFGMCILEMVTFEYPFSECKNPAQIYKKVTSGIKPASLLRVSDPQIREFIEKCLVPASQRLSAQELLKDPFLQVENPKIPIRDPLQLPSQAPKSINLSKSGPSSMDIDADYKQILMSTYAENNCGSPQSLILELRGIFQEKEFGLRGTKNDDKSVSLTLRIVYLYGRVKKIHFLFYLDTDTAVSVASEMVEELELAEHDVTFIAELIDHLIMELFIGWMPSSDYSSIKGISFNGGSPKVVDEQTITSPWDSVLASVPAGLIIEQDVVSRSNITTQEVLVTPEAGFLNDSACNNAKLQGEYNSSSILVDLEYQYSQGSATSEVVIEDASMKNDNSPEEGFLRDDIDNNATLKSFYNSSPSSVNMEYQYSQGSATTEIAVEDASMRNDNFLDFNFDGSSKCLSWSVSELELGDIDFEAGKFQRITDRYVREGIVINNFTKNRTIPAFSGTSNAFSLTSSSSSLSLVDENIDSGLKSELEAIEAEYQRRYEDLSRRKLKEVESATRRWMAKKKLAVH 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1183 769 ProSiteProfiles Protein kinase domain profile. 70 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1183 769 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 425 466 IPR024678 GO:0004674|GO:0005524
Dere12g1183 769 Gene3D Transferase(Phosphotransferase) domain 1 153 332 - -
Dere12g1183 769 Pfam Protein kinase domain 73 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1183 769 FunFam probable serine/threonine-protein kinase WNK9 153 332 - -
Dere12g1183 769 Coils Coil 728 748 - -
Dere12g1183 769 CDD STKc_WNK 68 327 - -
Dere12g1183 769 Gene3D - 408 471 - -
Dere12g1183 769 Gene3D Phosphorylase Kinase; domain 1 54 151 - -
Dere12g1183 769 SMART serkin_6 70 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1183 769 FunFam Probable serine/threonine-protein kinase WNK1 55 151 - -
Dere12g1183 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Dere12g1183 769 SUPERFAMILY Protein kinase-like (PK-like) 63 328 IPR011009 -
Dere12g1183 769 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 52 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1183 Dere-ChrDere12 22579243 22583189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1183 695 769 MAP Kinase Kinase Kinase AT5G41990 32.000 8.96e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Dere12g1183 Pkinase 2.9e-52 CL0016