Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1178 ATGGGAAGAGCTCCTTGCTGTGCAAAAGTTGGGTTGCATAGAGGTCCATGGACACCTAAAGAAGATGCATTGCTCACAAAGTATATTCAAGCTCATGGAGAGGGTCAATGGAGATCTCTACCGAAGAGAGCTGGACTTTTAAGATGTGGAAAAAGTTGCAGACTGAGATGGATGAATTATCTGAGACCAGATATAAAGAGAGGGAACATAACTCCCGAAGAAGACGACCTCATCATCAGAATGCACTCTCTTCTCGGAAACCGATGGTCTCTCATCGCCGGAAGATTACCGGGACGAACAGATAACGAAATCAAGAACTACTGGAACACCCATCTCAGCAAAAGGCTCAAAACACAGTTAGGACCTCATCATCAAGAAGCAGTACCCAAGCGAAGAAACAAAATCAACACCAACAAAAAGAAGTCGAGCAGAAATATTAACAGTAAGAACCGATCAAACAATAACGTCGAGGAGGAAGCAGAAGAAGAGAAGAAGACGAATATTTATCTTCCAAAACCTATTAGGGTTAGTGCTCTATCTATAAGCAGAAACGACAGCACCGCCACCTCGACCTTAGATTCCAACAATTCTTCTTCTTCGAGCCAGGACAAGGACGAAAGCCCAGAATTGTTACAGCAGACAGACGTGAATGCGAATAATTATGGGCTCTGGGGTGAAAGTGAAAATGCTGGGTTTGGGTTTTTTGTCGAAGAAGACATTAACATGGACCTAGTCAACGCCTCCACATCACAAGACGATACTATGGAGGGCCACTCACTGGAGAAGCTATATGATGAGTACTTGCAGCTTTTGAAGAATAATAATAATGGTGACGAAAGTTTAAACCAAGAGGAATGGGATTATTTTGCTCAATCTTTATTTGTTTAG 888 0.4257 MGRAPCCAKVGLHRGPWTPKEDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKRLKTQLGPHHQEAVPKRRNKINTNKKKSSRNINSKNRSNNNVEEEAEEEKKTNIYLPKPIRVSALSISRNDSTATSTLDSNNSSSSSQDKDESPELLQQTDVNANNYGLWGESENAGFGFFVEEDINMDLVNASTSQDDTMEGHSLEKLYDEYLQLLKNNNNGDESLNQEEWDYFAQSLFV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1178 295 SMART sant 66 114 IPR001005 -
Dere12g1178 295 SMART sant 13 63 IPR001005 -
Dere12g1178 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere12g1178 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere12g1178 295 MobiDBLite consensus disorder prediction 184 209 - -
Dere12g1178 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere12g1178 295 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere12g1178 295 CDD SANT 16 61 IPR001005 -
Dere12g1178 295 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere12g1178 295 Coils Coil 139 166 - -
Dere12g1178 295 Gene3D - 71 116 - -
Dere12g1178 295 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Dere12g1178 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere12g1178 295 Gene3D - 14 66 - -
Dere12g1178 295 FunFam Myb transcription factor 11 67 - -
Dere12g1178 295 CDD SANT 71 112 IPR001005 -
Dere12g1178 295 MobiDBLite consensus disorder prediction 119 133 - -
Dere12g1178 295 FunFam MYB transcription factor 68 125 - -
Dere12g1178 295 MobiDBLite consensus disorder prediction 117 164 - -
Dere12g1178 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1178 Dere-ChrDere12 22517052 22518642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1178 1 116 MYB Transcription Factor Family AT5G49330 75.000 6.10e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere12g1178 Myb_DNA-binding 8.4e-14 CL0123