Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1173 ATGGCACATCTGGGGTGTAATCTCAGAGCCCCGACCAGTTCTCAAGCGGATACAGGTTTGGAAGATGACGATCTGTATACGGAATTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTGCCGGGGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTGCAAGCATCAACGAATCAGGAATTGAACCAACAAATTCCCCATTTCAATATTTCATCCAAGATTCTATGCCGAGTTATTCACATTCAATTATTGGCGGAGCCAGACACGGATGAAGTTTACGCTCGTATTACTCTGCTTCCAGAATCAGATCAAACTGAGCCTGCAAGCCCTGATACATGTCCACCTGAGACTCGGACACAAACTTTTCATTCATTTTGCAAGATATTAACGGCCTCTGATACTAGCACACATGGAGGATTTTCGGTTCTGCGGAAGCATGCTAATGAGTGCTTACCTCAACTGGACATGACCCAAGCAACCCCAACTCAGGAGTTGGCGGCAAAGGATCTCCATGGGTTTGAGTGGAAATTTAAGCATATATTTAGAGGTCAACCACGGAGACACTTGCTTACAACTGGCTGGAGTACATTTGTCACTTCCAAAAGATTGGTAGCTGGAGATGCTTTTGTGTTTTTGAGGGGAGAGACTGGGGAACTGAGAGTTGGTGTTCGACGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCAGTAATATCGAGCCAGAGCATGCATCTTGGGGTGCTTGCTACTGCTTCCCATGCTGTTGCAACTCGTACCATGTTTGTGGTTTACTACAAACCAAGGACTAGACAATATATAATTGGTTTGAACAAATATCTGGAGGCAATCAACAATAAGTTCTCGGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGATGACTCGCCTGAGAGAAGGTTTTCTGGCACTATTGTTGGTGTTGGTGATGTATCCCCAGAGTGGCCAGACTCGAAGTGGCGGTCATTGAAGGTACAATGGGATGAACCAGCAACAATTCCAAGGCCAGAGAGAGTTTCTCCCTGGGAGATAGAACCTTTTGTGGCTTCTACAGCTCTAAATCTTGTTCAACCGGCTGTAAAGAGCAAAAGATCCCGGCCTGCTGATGTCCCATCTTCTGAATTGGCTTCCAATTCAGCTGCTTCAGCTTTCTGGTATCATGGATCATCCCAGTCCCATGAGCTTGCTCAATTAGGTGGTGCAACAGAAGTACAAAGCAATGAAAACAAGGTTTTATGGAATGTCAAGCAGAATGATATGAATGGCAATCTTATGAATAACGGTAGCTCTGGCAGCTCTAGAGTCCGGATAGAAGGAATGTGGCATTCTTCACATATGAATGTCTCTTCAAACTGTTTTCCTGACGTGAAAGTTAACAAAGTTGTTGCAGCACAATCTTCTATCTCTAGTTATCCTCCTGTTTCTTCTCGGCCAAATGATGTTCCAGTATATGATCAAGTCGAGAATGGGAAGAAATCTGAGAATCCTATGGGTTGCCGCTTATTTGGAGTTAATTTGACTAACAACTCTACTCATTTAGCTCCTTATGAGAAAGAAATTGGAGGCTGTATTACTATTCCTAGTGGTCTCAAAGACTCTATTCCTGTTGCTGCATGTGAAACCAAGAGAAGTCAGAATCCCATAACAGAGCAGAAGCAAGAAACATCTAATGCATCGCCAAATGAGAGGCAGAGCAAGCAGGCATCTTTACCATCCACGAGGACTCGGACGAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCTGTTGACTTGACCATGATAAAAGGCTATGATGATCTCATCGAAGAGCTCGAAAAATTGTTTGACATTAAAGGGGAGCTTCGTTCACGGAACAAATGGGCTGTTACTTTCACTGATGATGAGAATGACATGATGCTTGTGGGCGATGATCCATGGCCGGAGTTCTGTTGTATGGTCAAGAGGATTATCATCTATTCCAGCGAGGAAGTGAAGAAGATGAATGCAATATGCAAGGTTCCTGCATCTTCATCAGAGGATGAAGAAACTCTGGTCACCATGAATTCACAGAATAAGGATGAAAGTCAATAA 2106 0.4449 MAHLGCNLRAPTSSQADTGLEDDDLYTELWKLCAGPLVDVPRAGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVIHIQLLAEPDTDEVYARITLLPESDQTEPASPDTCPPETRTQTFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLEAINNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDVSPEWPDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASTALNLVQPAVKSKRSRPADVPSSELASNSAASAFWYHGSSQSHELAQLGGATEVQSNENKVLWNVKQNDMNGNLMNNGSSGSSRVRIEGMWHSSHMNVSSNCFPDVKVNKVVAAQSSISSYPPVSSRPNDVPVYDQVENGKKSENPMGCRLFGVNLTNNSTHLAPYEKEIGGCITIPSGLKDSIPVAACETKRSQNPITEQKQETSNASPNERQSKQASLPSTRTRTKVQMQGVAVGRAVDLTMIKGYDDLIEELEKLFDIKGELRSRNKWAVTFTDDENDMMLVGDDPWPEFCCMVKRIIIYSSEEVKKMNAICKVPASSSEDEETLVTMNSQNKDESQ 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1173 701 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Dere12g1173 701 Gene3D - 581 673 - -
Dere12g1173 701 ProSiteProfiles PB1 domain profile. 585 666 IPR000270 GO:0005515
Dere12g1173 701 SUPERFAMILY CAD & PB1 domains 580 661 - -
Dere12g1173 701 Gene3D - 291 363 - -
Dere12g1173 701 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere12g1173 701 Gene3D - 127 231 IPR015300 -
Dere12g1173 701 SMART B3_2 130 232 IPR003340 GO:0003677
Dere12g1173 701 MobiDBLite consensus disorder prediction 553 590 - -
Dere12g1173 701 FunFam Auxin response factor 580 673 - -
Dere12g1173 701 MobiDBLite consensus disorder prediction 684 701 - -
Dere12g1173 701 MobiDBLite consensus disorder prediction 681 701 - -
Dere12g1173 701 FunFam Auxin response factor 128 232 - -
Dere12g1173 701 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Dere12g1173 701 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Dere12g1173 701 CDD B3_DNA 128 230 IPR003340 GO:0003677
Dere12g1173 701 Pfam AUX/IAA family 561 621 IPR033389 -
Dere12g1173 701 Pfam AUX/IAA family 630 668 IPR033389 -
Dere12g1173 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere12g1173 701 FunFam Auxin response factor 291 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1173 Dere-ChrDere12 22412756 22417110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1173 25 672 B3 DNA Binding Superfamily AT4G23980 58.462 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere12g1173 B3 9.6e-21 CL0405