Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1169 ATGAAGATTGAGGTGGGTCTGGGAGGTATGTTGTGGAACGACGACGAACGAGCCTTGGTCGCAGCGGTTCTGGGCACTCGAGCTTTCGATTACTTGGTGAACAACTCCGTTTCGAATGAGAATCTGCTAATGGCCGTGGGGAGCGACGAGAATCTACAGAACAAGCTTTCGGATCTCGTGGACCGTCCGAACGTATCGAATTTCAGCTGGAACTATGCGATTTTCTGGCAAATTTCGCAGTCAAAAGCCGGAGATTGGGTTTTAGGCTGGGGTGATGGGTGTTGCAGAGAACCCAAGGAAGACGAAGAAGGCGGACTGAGAGGAATCCTGAGCCTCCATATGGAGGATGAGATGCAGCAACGGATGAGGAAGAGGGTGTTGCAGAAGCTTCACACAACGTTCGGTGGTTCAGATGAAGACAATTATGCATATGGATTAGACCGTGTCACTGATACTGAGATGTTTTTTCTTGCTTCCATGTACTTCTCTTTTCCTCACGGCCATGGCGGACCAGGTAAGTGTCTTGCAACTGGTAAGCACTTGTGGCTCACGGATGCACTGAAATCTAGCTCTGATTACTGTGTGAGGTCATTTCTGGCTAAATCAGCTGGAATTCAGACCATAGTTCTGATCCCTACTGATATGGGCGTGGTGGAACTGGGTTCTGTGAGGATGGTAAGAGAAAGCTTAGAATTGTTGCAGGCGATAAAATCGGTGTTTTCGGCCCAGTCTACATTCCCCAGGGTTAAACCAATTTCGCCTTTGCCTGTAGTGAATGAGAAGAAAGATGAAAATGCCATTTTTCCTGGTTTGGCAGTTGCGGACAAAGTAGAAGTACTTCCAAAGATTTTTGGGCAGGATTTGAACATGGCAAACCCGGCTCGAACCACCCAATTTAGGGAGAAACTTGCAGTTAGGAAAATGGAGGAGAGGCCATGGGGAGCAGGAGGTCACCCCAATGGGAATACCATTAGTTTTCCAAATGCTCGGAATGGTGTTCATGGTTCAAATTGGGCAGCTAACCAGGGTGTAAGGCAAGCCAGTCCTGCAGAAATTTATGCTCCTAGGCCCTCAGTTGGCAATGTACCGGTGCCGGACCTAGTTAATGGGGTTAGGCAAGATTTTCGGCTTAACACCTATCAGCAACAAAGGCAAGCGCAAATGCAAATTGATTTCTCAGGAGCCAATTCAAGGCCTGCTGTGAGATCAGTATGTGGTGAATCTGAACTTTCTGATGTTGAGGCTTCATGCAAGGAGGGACAGCCTGGTGCAACTGATGAAAGGAGGCCCAGGAAACGGGGAAGAAAGCCTGCAAATGGAAGGGAAGAACCCCTGAACCATGTGGAAGCGGAGAGGCAAAGACGTGAGAAGCTGAACCAGCGGTTTTACGCGTTGCGATCTGTTGTGCCCAATATCTCCAAGATGGACAAAGCCTCTTTGCTGGGAGATGCCATTGCTTATATCAATGAACTTCAGGCAAAACTCAAGATCATGGAATCTGAGAGAGAGAGGTTTGGAAGCACTTCAAGGGATGGATCAGTGGAGTCCAACCCTAATCAGAATCAAGCTCCTGATGTGGAAATTCAAGCTGCCCCGGATGAGGTCATTGTAAGGGTCAGCTGCCCTATTGATACTCACCCGATTTCAAAAGTGATCCAAGCATTCAAAGAGGCACAAATAAGTGTTGTTGATTCAAAACTTGCTGTTGCAAATGATACTGTCTTCCATACATTTGTGATCAAGCCTCAAGGATCTGAGCAGCTAACAAAGGAGAAGTTGATTGCTACAATTTCCTGCGAATCCAATTCCTTGCAGCCATTGTCTTCTGCTGGTTAG 1836 0.4749 MKIEVGLGGMLWNDDERALVAAVLGTRAFDYLVNNSVSNENLLMAVGSDENLQNKLSDLVDRPNVSNFSWNYAIFWQISQSKAGDWVLGWGDGCCREPKEDEEGGLRGILSLHMEDEMQQRMRKRVLQKLHTTFGGSDEDNYAYGLDRVTDTEMFFLASMYFSFPHGHGGPGKCLATGKHLWLTDALKSSSDYCVRSFLAKSAGIQTIVLIPTDMGVVELGSVRMVRESLELLQAIKSVFSAQSTFPRVKPISPLPVVNEKKDENAIFPGLAVADKVEVLPKIFGQDLNMANPARTTQFREKLAVRKMEERPWGAGGHPNGNTISFPNARNGVHGSNWAANQGVRQASPAEIYAPRPSVGNVPVPDLVNGVRQDFRLNTYQQQRQAQMQIDFSGANSRPAVRSVCGESELSDVEASCKEGQPGATDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKIMESERERFGSTSRDGSVESNPNQNQAPDVEIQAAPDEVIVRVSCPIDTHPISKVIQAFKEAQISVVDSKLAVANDTVFHTFVIKPQGSEQLTKEKLIATISCESNSLQPLSSAG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1169 611 MobiDBLite consensus disorder prediction 421 453 - -
Dere12g1169 611 PANTHER MYC 29 596 IPR045084 GO:0003700|GO:0006355
Dere12g1169 611 Gene3D - 435 507 IPR036638 GO:0046983
Dere12g1169 611 MobiDBLite consensus disorder prediction 412 453 - -
Dere12g1169 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 442 491 IPR011598 GO:0046983
Dere12g1169 611 Pfam Helix-loop-helix DNA-binding domain 446 492 IPR011598 GO:0046983
Dere12g1169 611 MobiDBLite consensus disorder prediction 510 526 - -
Dere12g1169 611 Coils Coil 488 508 - -
Dere12g1169 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 506 IPR036638 GO:0046983
Dere12g1169 611 FunFam Transcription factor bHLH13 435 509 - -
Dere12g1169 611 CDD bHLH_AtAIB_like 439 504 - -
Dere12g1169 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Dere12g1169 611 SMART finulus 448 497 IPR011598 GO:0046983
Dere12g1169 611 MobiDBLite consensus disorder prediction 502 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1169 Dere-ChrDere12 22356373 22358208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1169 5 611 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.821 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere12g1169 bHLH-MYC_N 6.9e-56 CL0161