Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1165 ATGTGTCATCAGTGCCAACGGAATGATAAGAGTGGTGTTGTCTTTTGCTTGAGTTGTGACAGAAAACGCTACTGTTATGAATGCCTCGAGAAGTGGTACCCAGGAAAAACACGGGAGGAAATTGAGAATAAATGCCCTTTTTGTTGTGGCAATTGCAATTGCAAAGCTTGTTTGCGAGAGCATCCAAAAGTAGATGACAGTGTTAAATTAGAACGACTGCTGTGCTTACTATACAAGGCTCTGCCTGTTCTTAGGCATATTCATAGGGAGCAGAGCTCTGAAATAGAGACTGAAGCTAAAATAAGAGGTAATCAACTGCAAGAAATTGACATAACAAGAACAAAGTTAGATGAAAGTGAGCGCATGTACTGTGACAATTGCAATACATCTATTGTTGGATTCTACCGAAGCTGTCCCAATCTCAATTGCTCTTATGACCTATGTCTTACCTGCTGTCAAGAGCTCAGAAATGGTTGCCAATCTGGAGGTGTAGGAGCTGAGACATTGCATGAACAGTTTGTAGAGAAAGATGGGAACCTAGATTCAACAAGGATTCATTGTAAGACACATGTGGAAACATATGGGTGGGAAAGCCAACTCACACCTACTGATTTTGATCTTCATGCTGGTGGAACCTCTCCATTTCCTGAATGGAGAGCTAACAGTGATGGTAGCATTCCATGTCCTCCAAAACTGCGAGGAGGTTGTGGCACTGCATTGCTAGAATTGAGACGCATTTTTAAAGCCGATTGGGTAGTGAAGCTGTTAAAAAATGCAGAGGATCTGACTAGATACTACACACCACTGGGTGTTGATCTTTTTGCTAAGTGTGCTTTATGCCAACCAAATTTGGTTGAAGGAAAATTTAATAATGAGATCAGGCAGGCGGCACTCAGGGATGATGGTCAAGACAATTTTTTATATAGCCCGAATGCCCTTGACGTGTCTGATGATGAAATTGAGCATTTCCAGATGCACTGGACTAGGGGCGAACCTGTGATTGTGAGAAATGTCCTGGACAAGACATCTGGCCTTAGTTGGGAACCAATGGTCATGTGGAGGGCCTTCAGAGAAACAGGTTCTAGGGTTAAGTTTAAAGAGGAAACACGGAGTGTAAAGGCTATTGATTGCTTTGATTGGTGCGAGGTAGAAATCAATATTCACCAATTTTTCCAAGGCTACCTAGAGGGTCGAGTGCATGATAATGGGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCAACCTTGTTTGAAGATCGTTTACCCAGGCATGGTGCTGAATTCTTTACAGCTCTACCCTACCGGGATTACACTGATCCAAAATTCGGTCTTCTGAATTTTGTCAGTAAACTTCCTGATGGCTCACTGAAACCAGATTTGGGGCCCAAAACATATATTGCTTTTGGTTTTTCTGACGAGCTTGGTATAGGTGATTCAGTTACAAAGCTCCACTGTGATGTCTCTGATGCGGTTCAAGAGTGGATTTATTATTATGTTGCTTTTCTGTTGAGTTTGTATTATGTTGGTAGTCCTGTACCAATCATTGATAACTCTATTTGCTGATGGATAATTGGGTTCTTGGTTGATGATATACGGTTGGATTTCGAGGTCAATATACTGACCCACACAACCAAGGTGAATATACCTACTTGGCAACGAGACTGCATAAAAGATTTGCAGAATAAATATGCAAATAAAGACGTGTATGAATCATACTATGAAGCACATAGTGATATTGATCGAAGACCTAAATCAAAAGTCTTGAATCATGATGAAAAGGCTGAGAATGGAATTAATAGTTTTTCTTCTGGTGGTAGCCAAATGGATGAATGTATTTCATTGGTATCCGAAGGCTTGACTAGGAAGTTAGAAACACCGGACAGAGAACAATTTGATGAGAGCAGAAACTGCTCTGCCACTGGCAGAAATTTGGCTGATAGAAGCTGCTGCTCTGCAGAAGATGGTGTTACTACAATATCTGCTGAAGTTTCTGATCATGCCAAGACTTTGGGACAGGAACATGAACATAGTCAATCTACATGTAACTTAACCTCACATCATAAGAGCAACACAAAAGACACAGGGGGGACTGGTTTTCTTGACAGTTTGTCTGAAGATCCAGAGTCTGAAAAATCAAAACATGGCCTGGTTAAAAATTCTGTAGAAACTAATAATGGAGCTTCAGTTGTCCTTGGTGGTGCTGTTTGGGATATCTTCCGTCGGCAAGATGTGCCAAAGCTAATAGAGTACTTAAGAAAGCACAAGATGGAATTCCGTCATATCGGCAATTCTCCTGTAAATTCTGTTATACATCCTATCCATGATCAGACTCTTTTCTTGAATGAGAAGCATAAGAGACAACTGAAACAGGAGTTCAATGTTGAACCCTGGACTTTTGAGCAACACCTTGGTGAGGCAGTTTTCATTCCCGCAGGATGTCCCCATCAAGAGGTCAATTTCTTTGTAAAACTGGGAGGCACCAAGGCTTGGCATCAACAGTGTCCTGTTGAGCATTCTTGCAGTAACACATGCCCTTGTAAATGTTATCTTCTAGTTGTTCAATCCCCACACAATCTGAGGAACATCCAGGAACTTATCTCGCTGGTGACACTAAGTTCAAAACTTGCCAATGGAGGACTGTTTCAGATATGA 2658 0.4142 MCHQCQRNDKSGVVFCLSCDRKRYCYECLEKWYPGKTREEIENKCPFCCGNCNCKACLREHPKVDDSVKLERLLCLLYKALPVLRHIHREQSSEIETEAKIRGNQLQEIDITRTKLDESERMYCDNCNTSIVGFYRSCPNLNCSYDLCLTCCQELRNGCQSGGVGAETLHEQFVEKDGNLDSTRIHCKTHVETYGWESQLTPTDFDLHAGGTSPFPEWRANSDGSIPCPPKLRGGCGTALLELRRIFKADWVVKLLKNAEDLTRYYTPLGVDLFAKCALCQPNLVEGKFNNEIRQAALRDDGQDNFLYSPNALDVSDDEIEHFQMHWTRGEPVIVRNVLDKTSGLSWEPMVMWRAFRETGSRVKFKEETRSVKAIDCFDWCEVEINIHQFFQGYLEGRVHDNGWPEMLKLKDWPSSTLFEDRLPRHGAEFFTALPYRDYTDPKFGLLNFVSKLPDGSLKPDLGPKTYIAFGFSDELGIGDSVTKLHCDVSDAVQEWIYYYVAFLLSLYYVGSPVPIIDNSICXWIIGFLVDDIRLDFEVNILTHTTKVNIPTWQRDCIKDLQNKYANKDVYESYYEAHSDIDRRPKSKVLNHDEKAENGINSFSSGGSQMDECISLVSEGLTRKLETPDREQFDESRNCSATGRNLADRSCCSAEDGVTTISAEVSDHAKTLGQEHEHSQSTCNLTSHHKSNTKDTGGTGFLDSLSEDPESEKSKHGLVKNSVETNNGASVVLGGAVWDIFRRQDVPKLIEYLRKHKMEFRHIGNSPVNSVIHPIHDQTLFLNEKHKRQLKQEFNVEPWTFEQHLGEAVFIPAGCPHQEVNFFVKLGGTKAWHQQCPVEHSCSNTCPCKCYLLVVQSPHNLRNIQELISLVTLSSKLANGGLFQI 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1165 885 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 818 IPR045109 GO:0032454|GO:0033169
Dere12g1165 885 MobiDBLite consensus disorder prediction 671 718 - -
Dere12g1165 885 Pfam JmjC domain, hydroxylase 734 822 IPR003347 -
Dere12g1165 885 SMART cupin_9 423 848 IPR003347 -
Dere12g1165 885 ProSiteProfiles JmjC domain profile. 442 847 IPR003347 -
Dere12g1165 885 MobiDBLite consensus disorder prediction 676 700 - -
Dere12g1165 885 ProSiteProfiles Zinc finger RING-type profile. 2 48 IPR001841 -
Dere12g1165 885 Gene3D Cupin 640 867 - -
Dere12g1165 885 Gene3D Cupin 312 599 - -
Dere12g1165 885 SUPERFAMILY Clavaminate synthase-like 320 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1165 Dere-ChrDere12 22317601 22323396 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere12g1165 JmjC 6.6e-13 CL0029