Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1160 ATGGCACAATTGCATAGTGATAGAATGGAATCGAGTAGCGTTGATAGTACTGTATCATCTCTGATTATGATGGATGAGGATGAGCATATTCCCCATCAGTTTTCTTCAATCACGAAGCTGCATAACAATGGTCCTGGTACTACCAGCGTCCATGAGCTTCTTGAATGCCCTGTTTGCACCAGTTCAATGTACCCTCCAATCCATCAGTGCCACAATGGGCATACTCTTTGTTCAACTTGTAAGACAAGGGTACACAACCGATGTCCAACCTGTAGACAGGAACTTGGGGATATCAGGTGTCTGGCGCTGGAAAAAATAGCAGAATCTCTTGAACTTCCTTGCAGATACAGCTCGCTTGGGTGTCCTGAGATATTTCCCTATTACAGCAAACTCAAACACGAGGCTATTTGTAACTTCAGACCATACAACTGCCCCTATGCTGGGTCTGACTGTTCTGTTGTTGGGGATATTCCATACTTAGTTGCTCATTTACGGGATGATCACAGGGTTGATATGCATTCTGGATGCACATTTAACCATCGCTATGTCAAGTCTAATCCTGTGGAAGTAGAAAATGCTACCTGGATGTTAACTGTCTTCCACTGTTTTGGTCAATACTTTTGTCTCCATTTCGAAGCGTTTCAGCTTGGTATGGCTCCTGTTTATATGGCATTCCTCCGATTCATGGGGGATGAAAGAGAAGCCCGGAGCTACACCTATAGCCTGGAGATAGGAGGAAATGGACGTAAGCAAATATGGGAGGGCAGCCCGCGAAGCATCAGAGATAGCCATAAGAAAGTTAGAGACAGCCATGACGGCCTCATTGTGTACCGAAACATGGCACTCTTCTTTTCAGGTGGGGATCGGAAAGAGTTGAAGCTACGTGTCACCGGAAGGATATGGAAAGAACAGCAAAATCCAGAAGGTGGAGTTTGCATACCCAACCTCTGTAGTTAA 957 0.4514 MAQLHSDRMESSSVDSTVSSLIMMDEDEHIPHQFSSITKLHNNGPGTTSVHELLECPVCTSSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYSSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARSYTYSLEIGGNGRKQIWEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1160 318 SUPERFAMILY RING/U-box 47 95 - -
Dere12g1160 318 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dere12g1160 318 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Dere12g1160 318 FunFam E3 ubiquitin-protein ligase SINAT3 106 164 - -
Dere12g1160 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 108 IPR013083 -
Dere12g1160 318 CDD RING-HC_SIAHs 54 92 - -
Dere12g1160 318 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Dere12g1160 318 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Dere12g1160 318 SUPERFAMILY TRAF domain-like 109 301 - -
Dere12g1160 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Dere12g1160 318 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 303 - -
Dere12g1160 318 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 297 IPR008974 GO:0005515
Dere12g1160 318 CDD Sina 170 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1160 Dere-ChrDere12 22267985 22272213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1160 11 304 C3H Transcription Factor Family AT2G41980 70.748 1.52e-158 443