Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1151 ATGATAATTAAGAGGACTATGAAAATTGAAATGCCGAACCTGAAACGTTGTAAGCTAGAGGAGCAGGATGCCGAGGACTATGGGTATGTGGCGGCTCCGAAGAAGCGGAGGGTTAATGGGTTTTATTCTCTTGGTATGCCGGGCGAGGCTGAAGATTTCAGCAGCGGTTCAGGGTCGGGGTGCAGTGAAGGATCGTATTGGGCTGGTGAGGTTCTATCAAATTTAAATTCTACGCCTTTGAATAGTACAACAGCCATGGAGCGAGCCTCAGAAAGGCTTCGGGCTCCACTGTTGCGGTCATCGCGAGGTCGTTCACAAATGCTTCCATCGAGGTTCAATGATTCGGTTCTTGACACATGGAAGAATGGGAGAAGCAACGTGGAGGACACAGACTCCAGCTTTGAAGATGATAATATTTTAGTTGAAGATAGGGCGGGGGTTAGTGGATTTGGATATGTAAAACAGGGAAAGGGAAATAACTATAGCTCCAAAAAGTCTAAGTATTATTCATATCCTGACATGGAGGAGGATGAATCAGGATTCAATGACTCAGGTTTAAATAGTTTTGACCACAGGAGGCTTGCTAAATTGTTTAGTACTACTAGAACAGCAGTTAATGGGAATCGTTCAACTGCAGTTAATGGGAATCGTTCATCAGCAGTTAAAACCGAGAGTTATACGTCTGGGCTTAGTTTTGAGGGTGCGCACCAAAAGCATAATCTAAATGCTGAAAGAAGGAAAGACATCTACAGGCCGGAGGATTTTGCTTTGGGCGATATAGTTTGGGCAAAGTGTGGAAAGAGATATCCGGCTTGGCCTGCTGTAGTGATTGATCCCATTCTGCAAGCTCCCAAGTCCGTTCTGAGCTGTTGTGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAACGGAAAGCAAAGGGACTACGCATGGGTCAAGCAGGGAATGATATTCCCCTTCATGGAATTCATGGACAGATTCCAGGGGCAGACTCGGCTGTACAAGAGCAAACCAACTGACTTTCAGGTGGCACTGGAGGAAGCGTTGTTGGCAGAAGATGGTTTTCTGGATTCACATATGGTGGCTGAGCAAATAACTACTGTAGAGGCTCATCCCAATGGGTTTATAGAGGCTACATATGTTGATCCAGAATATTACTCTCAAGACCAGGATATAAGACCTTGTGCTGGCTGTGGTCAACCTTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTCTGCTGCTCAACTTTATTGTAAACTTTGTGCCAAGTTACGAAAATCAAAGCAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCTGATGGCGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATATCCAGTAAACTTTTTAAGGATCTGGAACATACAGATTACTATTGCCCAGATTGCAAAGCAAATTTTAACAGTAAATTTCCAGCATCACAAACATACAAGCCAAAAATAAAATCAATAGAAAATAACCAAAATCCTGTTATACCTGATAAAATAACAGTTGTGTGCAATGGCATGGAAGGATTTTACATCCCAAAGCTTCATCTAGTTATGTGCAAGTGTGGTTCATGTGGTGAACGGAAGCAGACACTAAGTGAATGGGAAAGGCATACTGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTAAAGAGTACGATGCTTCCACTGGAAAAATGGATCATTGAAAACAATACACGAAGTGAAGTTTCTATGCAGTTGGATCAGCAGCAGGTACTTGCCTTTCTGCAAGAAAAGTATGAACCAGCTTATCCGAAATGGACCACAGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGATGATAACAAAATTATTATCTGCAACAGGTGCCAAATAGCAGTCCATCAAGAATGCTATGGAGCCAAGAATGTTAAGGATTTTACTTCTTGGGTCTGTAGAGTGTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACATGTGCTTGGTTCCGGCCTGAAGTTGGATTCTCCAACCATGAGACTATGGAACCTGCCTTTGGAATCCTTAAAATTCCTCCATCTTCCTTCTTGAAGACTTGTGTTATCTGTAAACAAAGCCATGGATCCTGCACGAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCTAGAGCAGGATACAGCATGGAGCTTCATTCTTTGGAGAAGAATGGAGTTCAAATAATAAAGAAGTTGATATACTGTGCAGTTCACAGGCTTCCAAAGCCAGATTCTGTAATGGTTGTACATACTCCGCTGGGGGTGTTCTCTCCCAGAACATGCCTGCAAAATCATAAGGGATGCTTCAGGGGATCAAGGCTGGCATCATCAAAGAACGTAGAACTTCTTGAATCTTCAGCCTCTGAAACTAATGAGTTTGAACCACTCTCTGCTGCAAGATGTCGTGTTTATAGAAGGTCTTCCAAGAGGGCTGATGTGCCAATAATACACTTAGTGAGGGGACCAAGTCATCATTCTTTAAGTGCAATAATTCAATTGAACAGCTCTAAGGACACTGAAGATTCTAAAGTGTTTACTTCTTTCAAGGAACGTCTTCACCATTTGCAGAAAACTGAAAACCATCGAGTATGCTTTGGAAAATCGGGTATACATGGATGGGGCCTCTTTGCACGTCAAGATATACAAGAAGGGGAAATGGTTGCTGAGTATCGTGGAGAGCAGGTAAGGCGAAGTGTTGCTGATATGAAGGAGGCTAAGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATCAGTGAGGAAGTGGTTATCGATGCGACACATAAAGGAAATATAGCACGCTTAATAAACCACTCTTGCATGCCTAACTGCTATGCAAGGATTATGAGTTTGGGTGAGGAGAGCCGGATTGTTCTTATAGCCAAGACCCATGTTTCTGCTGGAGAAGAACTAACGTATGACTACTTGTTTGATCCGGATGAACGGGAGGAACTGAAAGTTCCCTGCCTTTGTAAAGCCCCCAACTGTAGGAAATTTATGAACTAG 3153 0.4269 MIIKRTMKIEMPNLKRCKLEEQDAEDYGYVAAPKKRRVNGFYSLGMPGEAEDFSSGSGSGCSEGSYWAGEVLSNLNSTPLNSTTAMERASERLRAPLLRSSRGRSQMLPSRFNDSVLDTWKNGRSNVEDTDSSFEDDNILVEDRAGVSGFGYVKQGKGNNYSSKKSKYYSYPDMEEDESGFNDSGLNSFDHRRLAKLFSTTRTAVNGNRSTAVNGNRSSAVKTESYTSGLSFEGAHQKHNLNAERRKDIYRPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFMEFMDRFQGQTRLYKSKPTDFQVALEEALLAEDGFLDSHMVAEQITTVEAHPNGFIEATYVDPEYYSQDQDIRPCAGCGQPLPCKTMKKIKDSSSAAQLYCKLCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLEHTDYYCPDCKANFNSKFPASQTYKPKIKSIENNQNPVIPDKITVVCNGMEGFYIPKLHLVMCKCGSCGERKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWIIENNTRSEVSMQLDQQQVLAFLQEKYEPAYPKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPSSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYSMELHSLEKNGVQIIKKLIYCAVHRLPKPDSVMVVHTPLGVFSPRTCLQNHKGCFRGSRLASSKNVELLESSASETNEFEPLSAARCRVYRRSSKRADVPIIHLVRGPSHHSLSAIIQLNSSKDTEDSKVFTSFKERLHHLQKTENHRVCFGKSGIHGWGLFARQDIQEGEMVAEYRGEQVRRSVADMKEAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSLGEESRIVLIAKTHVSAGEELTYDYLFDPDEREELKVPCLCKAPNCRKFMN 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1151 1050 ProSitePatterns Zinc finger PHD-type signature. 621 666 IPR019786 -
Dere12g1151 1050 ProSiteProfiles PWWP domain profile. 257 326 IPR000313 -
Dere12g1151 1050 Pfam PHD-finger 633 667 - -
Dere12g1151 1050 CDD SET_SETD1-like 898 1046 - -
Dere12g1151 1050 SMART PWWP_4 255 324 IPR000313 -
Dere12g1151 1050 PANTHER PHD FINGER PROTEINS 74 1028 - -
Dere12g1151 1050 CDD PWWP_AtATX3-like 258 358 - -
Dere12g1151 1050 ProSiteProfiles Extended PHD (ePHD) domain profile. 672 787 IPR034732 -
Dere12g1151 1050 Pfam PHD-finger 436 489 IPR019787 -
Dere12g1151 1050 CDD PHD_TCF19_like 437 487 - -
Dere12g1151 1050 ProSiteProfiles Zinc finger PHD-type profile. 618 669 IPR019787 -
Dere12g1151 1050 ProSiteProfiles SET domain profile. 909 1025 IPR001214 GO:0005515
Dere12g1151 1050 Gene3D - 248 356 - -
Dere12g1151 1050 Pfam PWWP domain 258 353 IPR000313 -
Dere12g1151 1050 SUPERFAMILY FYVE/PHD zinc finger 619 683 IPR011011 -
Dere12g1151 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 669 IPR013083 -
Dere12g1151 1050 SMART PostSET_3 1034 1050 IPR003616 -
Dere12g1151 1050 Pfam PHD-zinc-finger like domain 674 786 - -
Dere12g1151 1050 SUPERFAMILY Tudor/PWWP/MBT 248 361 - -
Dere12g1151 1050 CDD ePHD_ATX3_4_5_like 675 786 IPR041955 -
Dere12g1151 1050 ProSiteProfiles Post-SET domain profile. 1034 1050 IPR003616 -
Dere12g1151 1050 SMART PHD_3 731 787 IPR001965 -
Dere12g1151 1050 SMART PHD_3 620 667 IPR001965 -
Dere12g1151 1050 SMART PHD_3 436 488 IPR001965 -
Dere12g1151 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 788 IPR013083 -
Dere12g1151 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 491 IPR013083 -
Dere12g1151 1050 FunFam Histone-lysine N-methyltransferase 883 1050 - -
Dere12g1151 1050 SUPERFAMILY SET domain 903 1047 IPR046341 -
Dere12g1151 1050 Pfam SET domain 920 1024 IPR001214 GO:0005515
Dere12g1151 1050 SMART set_7 909 1031 IPR001214 GO:0005515
Dere12g1151 1050 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1050 IPR025780 -
Dere12g1151 1050 ProSiteProfiles Zinc finger PHD-type profile. 434 490 IPR019787 -
Dere12g1151 1050 SUPERFAMILY FYVE/PHD zinc finger 434 493 IPR011011 -
Dere12g1151 1050 CDD PHD_ATX3_4_5_like 620 666 IPR042011 -
Dere12g1151 1050 FunFam Histone-lysine N-methyltransferase 670 789 - -
Dere12g1151 1050 Gene3D SET domain 871 1050 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1151 Dere-ChrDere12 22137415 22144725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1151 393 461 EF-hand Containing Proteins AT5G28340 59.420 6.89e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere12g1151 zf-HC5HC2H_2 1.6e-28 CL0390