Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1150 ATGGAGGACTATAATACAACCACCACTAAGGCTTACAATCTCTTCGTCAAGCTCTTGGACGGAAAAACCCTATCCCTAAATTTCCCATCTCCGACTCTTTACGCCAATTCCATAAAGGATAGCCTTTTCCAAGTTACGAGAATCCCCCCACAACACCAGCGCCTCGTCACCGGAGTGCGAGACCTCAACGGTAGCGGATCTGCTATCTCCTGCTCTCCGGAAGGCGGTGATGTGTTCCCCACCGTCCATCTGCTGCTGCGGCTCGCTGGTGGCAAGGGAGGGTTTGGGTCGCTTTTGCGTGGTGCTGCCACGAAGGCTGGGCAGAAGAAGACGAACAACTTCGATGCTTGCAGAGATATGAGTGGGCGAAGGTTGAGGCACGTAAACGCGGAAAAGAGATTGGAAGAGTGGAAGGCTGACGAGGCGGAGAGGAAGCTGCAGAAGATGGCGGAAGAGTTTTTGAAGAAGCAAGCGAAGAAGGGTAAGAAGGGTGTGGGTGATGGCGAGGCGCACAAGTACGTGGCAAAATATAGGGAGGAATCTGAGCGATGCACGGCTGAGGTTGCCGAGTCAGTAAAGGAGGCTTTGATGTCTATGAATGGCAAGAGAAAGGTTTCAGATTGTGTTAAAGACAGAGCAGATGCGAAGAAGATGAAGATATGGATGGGGAAGAGGAAATTAAATGAAAGTGATAGTGATGATTCTGATGAGGATGGAAGCGATGATGAAGGGGAAAATGAGAAATCAGTTGTATTAAATAATGGGAATGAGTCAGACTCAAATAAGGCTGAAGGCAGTTCTGGTTCAGTAACTGGTGGGAAACAGGATGGAGAATCTTCTGTTGCGGGCTCAAGTGGAAGTTGCTCTGAAGAAGAGAAAGACATTGTTCTAGAAGGCAAAATGGACTCTAGCGACTGCCTAAAGATTGAATCTCTTCAGGCTACATCAACCAATGTGGCTGAACCTGTGATTTGTGATAAGATGGTAAAGGGTGTCACTATGCCCTTTTCAGCATCTGCAGTTTCAGAAATTGTTGCTAAAGAAGCTGGAAAGCAGGATTCTAGTGGAGCTGACAAGCTTGATTCTGCAGTTGCTCAAGCCTCAAATTTTATGAGCTCTGAACATGTGGCTGATGCAAGCAAATCAAATGGTATTGAAATTGAGGGGCTGCTTGAGCATCAAATGTCATCACATGGAGAACCCCGCACAAGTGCCAGTGTTCAACAGATGGAGGAGCCTCTGAATTTTGATGCACTTAATTCAGCTGCAGAGCTTGAGGTTCTTGGCCTGGAAAGGTTGAAATCTGAACTTCAGACACGTGGGTTAAAATGCGGAGGCACATTGCAGGAGCGTGCTGCCAGGCTTTTCCTTTTAAAATCGACACCACTGGATAAACTTCCCAAGAAGGTGCTTGCCAAAAAATGA 1425 0.4737 MEDYNTTTTKAYNLFVKLLDGKTLSLNFPSPTLYANSIKDSLFQVTRIPPQHQRLVTGVRDLNGSGSAISCSPEGGDVFPTVHLLLRLAGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKADEAERKLQKMAEEFLKKQAKKGKKGVGDGEAHKYVAKYREESERCTAEVAESVKEALMSMNGKRKVSDCVKDRADAKKMKIWMGKRKLNESDSDDSDEDGSDDEGENEKSVVLNNGNESDSNKAEGSSGSVTGGKQDGESSVAGSSGSCSEEEKDIVLEGKMDSSDCLKIESLQATSTNVAEPVICDKMVKGVTMPFSASAVSEIVAKEAGKQDSSGADKLDSAVAQASNFMSSEHVADASKSNGIEIEGLLEHQMSSHGEPRTSASVQQMEEPLNFDALNSAAELEVLGLERLKSELQTRGLKCGGTLQERAARLFLLKSTPLDKLPKKVLAKK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1150 474 MobiDBLite consensus disorder prediction 249 287 - -
Dere12g1150 474 Pfam Silencing defective 2 N-terminal ubiquitin domain 12 159 IPR024974 -
Dere12g1150 474 Pfam Replication stress response SDE2 C-terminal 403 473 IPR025086 -
Dere12g1150 474 PANTHER SPLICING FACTOR SF3A-RELATED 13 473 - -
Dere12g1150 474 SUPERFAMILY Ubiquitin-like 11 92 IPR029071 -
Dere12g1150 474 Coils Coil 125 159 - -
Dere12g1150 474 Gene3D - 4 93 - -
Dere12g1150 474 MobiDBLite consensus disorder prediction 224 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1150 Dere-ChrDere12 22131512 22134421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1150 414 473 C2H2 Transcription Factor Family AT5G06160 50.000 3.17e-09 57.0