Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1148 ATGAATTCAAAGGGACATAAATTTGTGAGGTTTGAGGATTGGAGTTCAGAGTCATCATTTAGTATTGAGCAAAAAAATTCTAGTGATAATAGATATCATGGAAGAAAACTCAGACCAAGTGTTAGTGCTGTTTTAGATAGTATCAGAAGAAGACTTGAGAATGGATCTGAGAAGATAAAAAACTTAAGAAAATCCTCAGCTGTCCATCCCGTAAGTGATGGACCACCCAAAAAATTGGCTTCTAGAAGCAAAATTCTTGATCCACAGGGACCACTCCTTCAGAAATGGAACAAAATATTTGTAATCACATGTGTGATGGCAGTCTCTGTGGACCCACTGTTCTTTTACATCCCAGTGATTGAAGACTCAGGCAAATGCCTTAAGTTAAGTGGGAGCTTGCAGATTACTGCTTCTGTTCTTCGTACATTCTTTGATCTTTTCTACATCCTTCACATAATCTTTCAGTTTCGAACTGGGTTTATCGCCCCTTCTTCTCGAGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTCACGCTATAATGAAAAAATACTTATCTTCGTACTTCATCATTGACATTCTATCAATTGTTCCACTTCCACAGGTGGTTGTTTTATTTATCATTCCAAGCCTGAAAAGCTCAGTTCCATTTGTGGCAAAGGACTTATTGACGTATATGGTCTTGATTCAGTATGTGCCAAGACTCCTGCGGATTTACCCATTATTCAATGAAGTAACAAGAACTTCTGGCATACTAACAGAGACAGCATGGGCTGGAGCTGTATATAATCTATTTCTCTATATGCTAGCAAGTCATATTGCTGGAGCTTTCTGGTACCTGTTTTCGATAGAATCAGAGCTTCGGTGCTGGCGCAAAGTATTGAAGAATGCTACAATATATCATGATTCATATGTTAGCTGTAAACACAATCAAACTGTTATCTCACTTCTCAATAGTTCTTGCATCGTTGTTGATCCTGATGACATTACAAACTCAACATTCTTCAACTTCGGAATATACGCTGATGCTCTAAAATCTGGTGTGGTAGAGTCAACAACAGATTTTCCTCAAAAATTCTTCTACTGTTTTTGGTGGGGTTTGCGCAACTTAAGTTCTCTTGGACAAAACCTTGCCACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTGCGTTGCCATCTTTGGATTGGTTTTGTTCTCGTTGCTTATTGGAAACATGCAGAAATATTTGCAATCTACGACTGTTAGAGTTGAAGAGATGAGAGTCAAAAGGAGAGATGCAGAGCAATGGATGTCCCACCGTATGCTACCTGAGAACTTAAGGGAGAGAATCAGACGGTATGAACATTACAAATGGCAAGAAAATCGGGGTGTTGAAGAGGAAACATTAATTCGCAACCTTCCTAAAGATCTCAGAAGGGATATAAAGCGTCATCTTTGCTTGGCTTTAGTTAAAAAAGTGCCAATTTTTGAGAAAATGGATGAACAGTTGTTGGATGCAATGTGTGATAGATTGAAGCCAGTTCTTTATACTGAGAAGAGCTATATTGTTCGTGAAGGGGATCCTGTGGATGAAATGCTTTTCATTATGCGTGGAAAGCTTGCTACTATGACAACAAATGGAGGAAGAACTGGTTTCTTTAACTCCTCTGTTCTCAAAGCTGGTGATTTCTGTGGAGAGGAACTTCTAACATGGGCCCTGGACCCCAATTCCTCGACAAATCTTCCAATTTCTACTAGAACAGTAGAATCTATCTCAGAAGTTGAAGCTTTTGCTCTCATGCCTGATGACTTCAAGTTTGTTGCTTCCCAGTTTCGACGTCTTTACAGCAAACAGCTCCAGCACACTTTCAGGTTCTATTCCTTGCAATGGAGGACATGGGGTGCCTGTTTCATACAAGCAGCTTGGCGTCGCTACTGCAAAAAGAAGACAGAGAGGTCATTACGTGAAGCAGAAGGAAGGTTACAAGATGCTTTGGCTAATGAGAATGGATCATCAGCAACACCTAGTCTTGGTGCCACCATTTATGCGTCAAGGTTTGCTGCAAATGCATTGCGAAACTTGCGACAAAATGGCGGACAGAATAGCAGAATGACACCGAGATTACTACCTATGCTGCCTCAGAAACCAGCTGAGCCTGATTTCACCTCTCAAAATCATTAG 2166 0.4035 MNSKGHKFVRFEDWSSESSFSIEQKNSSDNRYHGRKLRPSVSAVLDSIRRRLENGSEKIKNLRKSSAVHPVSDGPPKKLASRSKILDPQGPLLQKWNKIFVITCVMAVSVDPLFFYIPVIEDSGKCLKLSGSLQITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVDDPHAIMKKYLSSYFIIDILSIVPLPQVVVLFIIPSLKSSVPFVAKDLLTYMVLIQYVPRLLRIYPLFNEVTRTSGILTETAWAGAVYNLFLYMLASHIAGAFWYLFSIESELRCWRKVLKNATIYHDSYVSCKHNQTVISLLNSSCIVVDPDDITNSTFFNFGIYADALKSGVVESTTDFPQKFFYCFWWGLRNLSSLGQNLATSTYVGEIIFAICVAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPENLRERIRRYEHYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLALVKKVPIFEKMDEQLLDAMCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATMTTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSTNLPISTRTVESISEVEAFALMPDDFKFVASQFRRLYSKQLQHTFRFYSLQWRTWGACFIQAAWRRYCKKKTERSLREAEGRLQDALANENGSSATPSLGATIYASRFAANALRNLRQNGGQNSRMTPRLLPMLPQKPAEPDFTSQNH 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1148 721 MobiDBLite consensus disorder prediction 691 721 - -
Dere12g1148 721 FunFam Cyclic nucleotide-gated ion channel 1 417 481 - -
Dere12g1148 721 SUPERFAMILY cAMP-binding domain-like 419 615 IPR018490 -
Dere12g1148 721 Gene3D Jelly Rolls 488 608 IPR014710 -
Dere12g1148 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 74 716 - -
Dere12g1148 721 Pfam Cyclic nucleotide-binding domain 510 601 IPR000595 -
Dere12g1148 721 Coils Coil 45 65 - -
Dere12g1148 721 Gene3D Helix hairpin bin 417 481 - -
Dere12g1148 721 Gene3D - 98 414 - -
Dere12g1148 721 Pfam Ion transport protein 96 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere12g1148 721 SMART cnmp_10 490 621 IPR000595 -
Dere12g1148 721 Coils Coil 642 662 - -
Dere12g1148 721 CDD CAP_ED 490 621 IPR000595 -
Dere12g1148 721 FunFam Cyclic nucleotide-gated ion channel 1 488 606 - -
Dere12g1148 721 SUPERFAMILY Voltage-gated potassium channels 87 412 - -
Dere12g1148 721 MobiDBLite consensus disorder prediction 14 34 - -
Dere12g1148 721 ProSiteProfiles cAMP/cGMP binding motif profile. 490 574 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1148 Dere-ChrDere12 22083988 22088916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1148 1 720 Ion Channels AT5G53130 64.986 0.0 964