Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1145 ATGCCCACAAAACTCTTATCACAACTCCATCTTCTCCAAGTTCCTTGCTTCGTTCGATTCCCCTCCATGAAGCTCGGAGCTCCCATTCCGTCGTCCCGGACAATTCCCATTTTCTCTCGGATCTTCCCCTTCAGGCTCAAGTACCTGGGGCTGGAGTCTCGCGCTGTTCGGAATGAACTTCTCGGTGTACGGCGATTCTCGTCTCGTTCCTTTGCTGGGAGGACTAGGTCGAAGTCACTGTTCGACCGGGGGAATCGTGATAGAGAAAGGGTCGGGGTTTCGAAGAGTTTGATTGAGGATGAGGCTGAACTCAGTGACTGGGTTGACGAGTTGAGGACCGATTCTTACCGCGGTCGACTCACCAGCGAAGACGACGACTCGGATAGGGAGAGGGGTCGTAATGGAGGGAGGGGTATAGGAGCTGTGGCGATGAAAGGGAGGAGGGAGAGTGGCTCGGATAGATTTGGTGAGTCAACTCGGAGGAGAACTCGGGATTCTGTTGAGTCGTTTTCGAGGAATTCTCGTGTGAGTCGCAGGTTTGAAGATGATGACGATGAGGAGGAAGATGTATTCCGCTCCCGGAGAAGCAGTAGAGTGTCCGAAGGTAGGAATGTGAAATCTCTCTTGGGGAAGAGAAGTGGTGAGGAGTTGAGGAGAGGGAGAAAGGATGCAAGGAGAAAATCGCATTCGATAAGCGATGATGATGCTGATGAAGATGAACAGGAGGCAAAGAAGTTTATGGGAGGCATTGGAGATTTTATCAGCGAAGAAGATAGTGACGCTGAAGATACTGGGGATGACGATAGTTATGATAATATATTGAAAAAGAGTAGAAGTTCTCTGTTTGGTCAAGAAAAGGAGTTGAAAAAGAGCAGTGCGCCAAGAGATTCTCCTGAGAGATCTGAATCTTATTTAAGTGAGACCAGATTTGATCAATGTTCAATCTCACCATTATCATTGAAAGGAGTCAAGGATGCTGGATTTGAGAAAATGACCGTTGTGCAGGAAGCAACTCTTCCAGTAATACTCAGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACTGGAAAAACTGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAAGTCACCTCCAATTGATCGTGATCAAAAGCGGCCTCCAATTTTTGTGCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTACTGAAGTACCACCCTTCCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTCTTGAACAGAAACGTATGCAAGCTAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGACCATATTGAGAATACAGCTGGGTTTGCGACTCGTCTAATGGGTGTGAAAGTCCTTGTACTGGATGAAGCTGATCACTTACTAGACATGGGATTTCGCAAAGACATTGAGAGGATTATTGCTGCAGTTCCTAAACAACGACAAACACTTCTTTTTTCTGCTACCGTACCTGAAGAGGTCCGTCAAATCTGCCTTATTGCATTAAGAAGAGATCATGAATTTATCAATACAGTTGAAGAGGGTAGTGGGGAGACACATTCACAGGTTCAACAGATGCATTTGGTTGCCCCATTAGACAAGCATTTCTCCTTACTCTACGTTCTTCTAAAGGAGCATATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTTTGCACAACTGCTATGGTCACAAGACTTGTTGCTGACCTTCTTGGCGAGTTGAACTTGAATGTGAGAGAAATTCATTCAAGAAAGCCTCAGAGCTATAGAACCAGGGTCTCTGAGGAATTTCGGAAGTCAAAGGGCCTAATTCTTGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTAGTTGTACAGATGGGTTTACCAGCTGATAGAGAACAGTATATACACCGACTGGGTCGAACAGGAAGAAAAGGTAAAGAAGGACAAGGAATTTTACTACTGGCTCCTTGGGAAGAATTCTTTTTATCTACCGTAAAGGATTTGCCAATAATAAAAGCTCCAGTACCTTCAGTTGATCCTGACACCAAGAAAAAGGTGGAAAGGGCGCTATCCCATGTGGAGATGAAGAACAAAGAAGCGGCATATCAGTCCTGGCTTGGTTACTATAATTCCAACAAGAAAGTGGGGAAAGACAAGTATAGGCTAGTGGAGCTTGCAAATGAGTACAGTAGAAGCATGGGACTTGATAACCCTCCAGCTATTCCTAAGCTAGTTCTTGGCAAGATGGGCCTCAGAAATATACCTGGTTTACGTTCCAAATAG 2331 0.453 MPTKLLSQLHLLQVPCFVRFPSMKLGAPIPSSRTIPIFSRIFPFRLKYLGLESRAVRNELLGVRRFSSRSFAGRTRSKSLFDRGNRDRERVGVSKSLIEDEAELSDWVDELRTDSYRGRLTSEDDDSDRERGRNGGRGIGAVAMKGRRESGSDRFGESTRRRTRDSVESFSRNSRVSRRFEDDDDEEEDVFRSRRSSRVSEGRNVKSLLGKRSGEELRRGRKDARRKSHSISDDDADEDEQEAKKFMGGIGDFISEEDSDAEDTGDDDSYDNILKKSRSSLFGQEKELKKSSAPRDSPERSESYLSETRFDQCSISPLSLKGVKDAGFEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPIDRDQKRPPIFVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLLFSATVPEEVRQICLIALRRDHEFINTVEEGSGETHSQVQQMHLVAPLDKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQMGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTVKDLPIIKAPVPSVDPDTKKKVERALSHVEMKNKEAAYQSWLGYYNSNKKVGKDKYRLVELANEYSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1145 776 SMART ultradead3 327 540 IPR014001 -
Dere12g1145 776 Pfam DEAD/DEAH box helicase 333 510 IPR011545 GO:0003676|GO:0005524
Dere12g1145 776 MobiDBLite consensus disorder prediction 147 181 - -
Dere12g1145 776 Pfam Helicase conserved C-terminal domain 556 661 IPR001650 -
Dere12g1145 776 Gene3D - 532 754 IPR027417 -
Dere12g1145 776 MobiDBLite consensus disorder prediction 118 272 - -
Dere12g1145 776 PANTHER RNA HELICASE 268 705 - -
Dere12g1145 776 SMART helicmild6 580 661 IPR001650 -
Dere12g1145 776 CDD SF2_C_DEAD 537 670 - -
Dere12g1145 776 MobiDBLite consensus disorder prediction 118 135 - -
Dere12g1145 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 500 IPR027417 -
Dere12g1145 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Dere12g1145 776 MobiDBLite consensus disorder prediction 208 234 - -
Dere12g1145 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 677 IPR027417 -
Dere12g1145 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 522 IPR014001 -
Dere12g1145 776 Gene3D - 269 523 IPR027417 -
Dere12g1145 776 CDD DEADc_MSS116 315 524 - -
Dere12g1145 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 703 IPR001650 -
Dere12g1145 776 MobiDBLite consensus disorder prediction 284 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1145 Dere-ChrDere12 22024918 22031256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1145 308 686 Eukaryotic Initiation Factors Gene Family AT3G19760 27.848 3.26e-46 168