Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1134 ATGGACAAGCGTCGCAGGAAGCAAGAAAAGGCTAGTAGCTCTTACTCTGAAGAGGTGAGCAGCATCGAGTGGGACTTCATAAACATGTCAGAGCAGGAAGAAGATCTCATTCACAGAATGTACAGGCTGGTTGGCGACAGATGGGGTCTGATAGCAGGTCGAATTCCAGGTCGAAAAGCTGAGGAAATAGAGAGGTTTTGGATTATGAGACATGGAGAAGTGTTTGCTAGCAGAAGAGAAAAGCTTAACAAATGTAAATCCTAA 264 0.447 MDKRRRKQEKASSSYSEEVSSIEWDFINMSEQEEDLIHRMYRLVGDRWGLIAGRIPGRKAEEIERFWIMRHGEVFASRREKLNKCKS 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1134 87 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 28 69 - -
Dere12g1134 87 SUPERFAMILY Homeodomain-like 30 68 IPR009057 -
Dere12g1134 87 CDD SANT 28 67 IPR001005 -
Dere12g1134 87 Gene3D - 30 70 - -
Dere12g1134 87 SMART sant 25 73 IPR001005 -
Dere12g1134 87 FunFam MYB-like transcription factor 28 70 - -
Dere12g1134 87 Pfam Myb-like DNA-binding domain 29 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1134 Dere-ChrDere12 21852967 21854328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1134 29 81 MYB Transcription Factor Family AT5G52600 49.057 7.36e-13 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g1134 Myb_DNA-binding 2.4e-05 CL0123