Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1133 ATGTTTTGTGTACACGTCTTGCATGTCACTCCAGAGGTTAGCAGCATTGAGTGGGAGTTCATAAACATGTCCGAGCAAGAAGAAGATCTCATTCACAGAATGTACAAGCTGGTCGGAGACAGATGGAGTCTGATAGCAGGTCGAATTCCAACTCGAAAGGCTGAAGAGATAGAAAGGTTTTGGATAATGAGAGATGGAGAAGTGTTTGCTAGCAGAAGAGAGAAGCTTACCAAATCTAATTCCTAA 246 0.4268 MFCVHVLHVTPEVSSIEWEFINMSEQEEDLIHRMYKLVGDRWSLIAGRIPTRKAEEIERFWIMRDGEVFASRREKLTKSNS 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1133 81 Gene3D - 24 64 - -
Dere12g1133 81 CDD SANT 22 61 IPR001005 -
Dere12g1133 81 SMART sant 19 67 IPR001005 -
Dere12g1133 81 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 22 62 - -
Dere12g1133 81 Pfam Myb-like DNA-binding domain 23 62 IPR001005 -
Dere12g1133 81 FunFam MYB-like transcription factor 22 64 - -
Dere12g1133 81 SUPERFAMILY Homeodomain-like 24 62 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1133 Dere-ChrDere12 21845410 21846704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1133 23 79 MYB Transcription Factor Family AT5G52600 49.123 2.23e-13 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g1133 Myb_DNA-binding 2.5e-06 CL0123