Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1108 ATGATGAATCGTCCATCGCCGGTCACCACCACCTTCTTCCCAATTGTTTGGGCGTCCACTTTCCTAGAACTTTCTATTCTTGAAACGAAGATCAGCAAAAGTTCCGGTAATGCGTTGTTATATGTCAATTCAAGCATGGAGCAATTTCGACAGCTTGGGGAGACACTAGGAAGCTTGAAGGCTCTAATGGTATTCAAAGACAATATCCAAATCAACCAGAGACAATGCTGTCTATTGCTGGATGCCTTCACCTTCACATACGATTCAATTGCGGAGGACATCCGACATAATCTCAAATTCGAAGAGAAACAAGGCAAGTGGAAGGTTCTTCAACAGCCATTGAAGGAGATCCATAGGATATTCAAAGAAGGAGAAGCTTACGTTAAGCAGTGTCTGCAAACAAAAGATTTGTGGGCTAAGGCTATTACTTTGTACAAGAACAAAGATTGTATTGAGTTTATTATCCACAACTTGCTTTGCTGCATTCCCATTGTTGTTGAGGCGATTGAATCTGCAGGCGAAACTTCAGGATGGGATCAGGATGAAATGCAGAGGAAAAGAATCATCAATTCAAACAAGTACAGGCAAGAATTTAGAGACATGAATCTTTTCCAATGGAAATTTGGGAAGCAGTACCTTATTACTCAGGATCTCTGCAACCGCTATGACACGGTTTGGAAGGAAGACAGGTGGTTTATCATCAACAAAATCAACGAGAAGAGAATATCAGGGTTGACAAAGCAAGGGATGAGATTAACAGACCTCCTCCTGAAGAATTTAGAAGGGTCAGAATCAATGGAGGGGAAACTGCTGCCAAGTTCGATCTTGTTGGGGTCAAAGGACTACCAGGTGAGGCGAAGACTTGGGAACAGCGGTCAGTACAAGGAGATTATATGGTTAGGAGAAAGTTTTGTTGTAAGGCACTTTCTTGGGGATGTTCAAGCTTTAGAACCAGAGATCACATCACTCTTATCACTTTCCCACTCAAATATAATGGAATTCCTTTGTGGGTTTGCTGATGATGAGAACAAAGAGTGCTTATTGGTAATGGAACTGATGAGCAAAAACCTCTGCACCTACATCAAAGAGGTTTATGGCTCAAGGAAACGGATACCATTCACACTTCCGGTGGCAGTTGACCTTATGCTTCAAATTGCCAGAGGAATGGATTATCTGCATTCAAAGAAAATATATCATGGGGAGCTAAATCCTGAAAGAATTCTCGTTAAACCAAGAGGTGCATCCTCAGAAGGTTACATGCATGCCAAAATCTCAGGGTTTGGGCTATCTTCGGATAAGAATTTGAACCAAAAAGCTGGTTCGAATCAGAATGGGACCCTCCCACTTATCTGGTATGCTCCTGAAGTTCTTGAAGAGCAAGAACAAAGTAGGAGTACTGAGAACTCCAAGTACACTGAGAAATCAGATGTTTATAGTTTTGGAATGGTTTGCTTTGAGCTTCTAACTGGTAAAGTCCCTTTTGATGATAATCACCTTCAAGGAGACAAATTGAGCAGAATCATTAGAGCAGGAGAGAGACCATCTTTCCCATTCAATACACCAAAATATGTTATTAACCTGACAAAGAATTGTTGGCACACTGACCCAAATCAACGGCCAAGCTTCTCTTCCATCTGCAGAATTCTTCGTTACGTAAAACGGTTTCTAGCAATGAATCCAGATAACAGTAACCAGCTAGATCCACCGGCACCACTGGTAGATTATTGTGATGTAGAGTCAGTGCTTTTGAGAAAGTTTCCTTCTTGGGGAAGTTCTGATCCATCACCAATATCGCAAATTCCATTTCAAATGTTTGCCTACCGAGTTGTTGAGAAAGAAAAGATAAGTTTAAGCTCTAAGGAGAGCTCTGATGCTGGAAGTGAAGCTTCAGCCTGTGGTGATGAACAATTTACCTCAGGGGACGAACGATCTCTGTCAACAACAGAAAGGAAATCCTCAGTTGGATCTGATAGTAAGAGCAGGAAGCTTTCACAAACCAAGAAAATGGATTTAAGGGGCATCAAACAACCAGTTACAACAAATAGACGATCCTATAGGCCTCCACAAATGTCTCTTTGTTCACGAAGTCTGAAGTTGAGTTCAGGGAGCCACCTGATGACAATGGGTTCAAGAATTAGAAGAGCATCTCCTTGTCATGTCTCAGATTCTGAGCTTTCGTAG 2181 0.4172 MMNRPSPVTTTFFPIVWASTFLELSILETKISKSSGNALLYVNSSMEQFRQLGETLGSLKALMVFKDNIQINQRQCCLLLDAFTFTYDSIAEDIRHNLKFEEKQGKWKVLQQPLKEIHRIFKEGEAYVKQCLQTKDLWAKAITLYKNKDCIEFIIHNLLCCIPIVVEAIESAGETSGWDQDEMQRKRIINSNKYRQEFRDMNLFQWKFGKQYLITQDLCNRYDTVWKEDRWFIINKINEKRISGLTKQGMRLTDLLLKNLEGSESMEGKLLPSSILLGSKDYQVRRRLGNSGQYKEIIWLGESFVVRHFLGDVQALEPEITSLLSLSHSNIMEFLCGFADDENKECLLVMELMSKNLCTYIKEVYGSRKRIPFTLPVAVDLMLQIARGMDYLHSKKIYHGELNPERILVKPRGASSEGYMHAKISGFGLSSDKNLNQKAGSNQNGTLPLIWYAPEVLEEQEQSRSTENSKYTEKSDVYSFGMVCFELLTGKVPFDDNHLQGDKLSRIIRAGERPSFPFNTPKYVINLTKNCWHTDPNQRPSFSSICRILRYVKRFLAMNPDNSNQLDPPAPLVDYCDVESVLLRKFPSWGSSDPSPISQIPFQMFAYRVVEKEKISLSSKESSDAGSEASACGDEQFTSGDERSLSTTERKSSVGSDSKSRKLSQTKKMDLRGIKQPVTTNRRSYRPPQMSLCSRSLKLSSGSHLMTMGSRIRRASPCHVSDSELS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1108 726 FunFam Kinase family protein 279 562 - -
Dere12g1108 726 Pfam Protein tyrosine and serine/threonine kinase 314 548 IPR001245 GO:0004672|GO:0006468
Dere12g1108 726 MobiDBLite consensus disorder prediction 618 692 - -
Dere12g1108 726 MobiDBLite consensus disorder prediction 677 692 - -
Dere12g1108 726 MobiDBLite consensus disorder prediction 644 669 - -
Dere12g1108 726 ProSiteProfiles Protein kinase domain profile. 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1108 726 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 280 550 - -
Dere12g1108 726 SUPERFAMILY Protein kinase-like (PK-like) 307 572 IPR011009 -
Dere12g1108 726 Gene3D Transferase(Phosphotransferase) domain 1 280 566 - -
Dere12g1108 726 Pfam Protein of unknown function (DUF1221) 66 279 IPR010632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1108 Dere-ChrDere12 21324801 21327995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1108 310 562 MAP Kinase Kinase Kinase AT3G50720 32.283 1.47e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Dere12g1108 PK_Tyr_Ser-Thr 2.9e-42 CL0016