Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1102 ATGAAGGAAACTAAGACAGTCACAAATAAGTTTGTGAAATCTGGGTTTCCAATCGCGGTTCCCAAAGTTGTTCGTATTACTGTCACTGATCACTATGCTACTGACACCTCGAGCGGGGAAGATGAAGACTACCAACCCAGAAGAGTGAGGAAGCTCGTGAATGAGATCAGAATCGAGAAATGCTCAAACTTCTTGGAGAACAGAGACGCTCATGGAGGAGGAGGAGGAGGGACACATGCTTCTTCGAAGCAGAGGTCCAGAAACAACCCGGGTAAGATGCGACCCCGAAAATATGATGGGGTTGACCCGAATGTTAAGAAGTACCGTGGGGTTCGACGGCGGGAGTGGGGGCGATGGGCGGCGGAGATCAGAGATCCGGTGCGGCGGGAGAGGGTGTGGCTCGGCACCTTCGACACGGCGGAGGAAGCCGCTCTGGAGTATGACAAAGCGGCGATTCGTCTCCGTGGCTCTGCTGCTATGACAAACATCCTTGAACCACCACCGAAAACTCCTCTGCCCATGGACGAATCCGAGGTAACCTCAGCGAACAATTTCGGGCTTTCCGAGATTGATTCGATTGAAGAGTCTCACAATAAGCGTGTGTCTTCTCCGACCTCTGTTCTGAGATTTCAGACTCTCGAAGAACCCAAAACAGAGACCAGAGAAGAAGACCCATATTTCCAAGATAGTAATTTATTGTTCTTAGATTCTCCCTTTGATAATTGCTATTCAGATTCCGAAATCCCTCTTCCAATGTTCTTCGACGAAACCAGCGTACCCCAGTTCATTTCGAACGACAATTTCAATTTCTCAGACGTTCCGTTCCATCTCGATCAAGATTTCGAGTCCTGTAAGTGGGATGTGGACAATTACTTTCAAGAACAAGACAGCATTCAAAATTGGGTTTGA 909 0.484 MKETKTVTNKFVKSGFPIAVPKVVRITVTDHYATDTSSGEDEDYQPRRVRKLVNEIRIEKCSNFLENRDAHGGGGGGTHASSKQRSRNNPGKMRPRKYDGVDPNVKKYRGVRRREWGRWAAEIRDPVRRERVWLGTFDTAEEAALEYDKAAIRLRGSAAMTNILEPPPKTPLPMDESEVTSANNFGLSEIDSIEESHNKRVSSPTSVLRFQTLEEPKTETREEDPYFQDSNLLFLDSPFDNCYSDSEIPLPMFFDETSVPQFISNDNFNFSDVPFHLDQDFESCKWDVDNYFQEQDSIQNWV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1102 302 MobiDBLite consensus disorder prediction 67 104 - -
Dere12g1102 302 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700|GO:0006355
Dere12g1102 302 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Dere12g1102 302 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Dere12g1102 302 CDD AP2 106 162 IPR001471 GO:0003700|GO:0006355
Dere12g1102 302 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Dere12g1102 302 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Dere12g1102 302 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Dere12g1102 302 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Dere12g1102 302 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Dere12g1102 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1102 Dere-ChrDere12 21247428 21248336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1102 22 216 AP2-EREBP Transcription Factor Family AT4G27950 46.465 4.02e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g1102 AP2 4.2e-14 CL0081