Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1061 ATGTCCTCCTCCGCCGCCACCACCACCTCCTCCTCCTTCCTCTCCAACATCGGACTCGGCTACTCCATCGCCATCGCCCTCGGCTTCCTCGTCCTCGTCTCCACCCTCATCCTCTCTTCCTACCTCTGCTGCCGCGCCTCCCGCTCCGTCCCTAACCACCACCACGGCAACCCCCAAACCCCACCGGCCGACGAGGGCATCGTTCTGCCCCGCATCATCTTCGTCGCAGAGGAAGACGAGCGCGACGACAACGGCGTCGTCGTGGGTCTCGCCCAGAACGTCATCAACTCGTACCCCAGGTTCCAATACAGCAAGGACGCCGTGGAAGACGGCAACAATACCAGCTGCTCGATCTGCTTGTCCGAGTACAGAGAGTCGGAGATGCTGAGGATGATGCCCGAGTGCCACCATTATTTCCACCTCTGCTGCCTCGACGCGTGGCTGAAGCTCAACGGGTCTTGCCCTGTTTGCCGAAACTCCCCCCTTCCGACGCCGCTGTCGACGCCGTTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCAGATGATCGGAGACGGACGAGGTGA 564 0.6223 MSSSAATTTSSSFLSNIGLGYSIAIALGFLVLVSTLILSSYLCCRASRSVPNHHHGNPQTPPADEGIVLPRIIFVAEEDERDDNGVVVGLAQNVINSYPRFQYSKDAVEDGNNTSCSICLSEYRESEMLRMMPECHHYFHLCCLDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYADDRRRTR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1061 187 SMART ring_2 116 157 IPR001841 -
Dere12g1061 187 Pfam Ring finger domain 115 158 IPR001841 -
Dere12g1061 187 SUPERFAMILY RING/U-box 95 163 - -
Dere12g1061 187 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Dere12g1061 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 162 IPR013083 -
Dere12g1061 187 PANTHER RING-H2 FINGER PROTEIN ATL67 4 185 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1061 Dere-ChrDere12 20473724 20474287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1061 1 178 C3H Transcription Factor Family AT5G06490 35.859 8.27e-39 130