Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1060 ATGTCTTCTCCCGAACCCTCTATCCCGGCAGCCGATGCCAAAATTTCCAGCACCACCGCCATCATTAGTGACCTTAGCATTGACTCGGTATTCACCCGAGCACTCATCATCATCCTTATCATCTTCTTCCTTGTCCGCTTGTGGTACATGATTATTTACCACATTCGTAACCATGATTGCAATCACAACCACTACGTTCATAACATTGTCCCTGACCCAACCATTAACCCTAACAATCAACAACATGAAGGCAACATCCAAAACGACGCCATTGTCGCTGTCAATTTTGACGTTGCCATCAACTCGTACCCAAGTTTCATGTACAGTGCTAAGATCAATGCTGCTGCCGGCGACAATGACAATGACAACATGACGTGTCCAATTTGTATTTGCGAGTACGTGGAGTCAGAGATGATGAGGATGATGCCCCAATGTGGACATTACTTTCACCTTAATTGCCTCGATGAATGGCTGACGATTAATTGGTCATGTCCGGTGTGCCGTGACTCACCGTCGATGCCACAAGTGGTGGCGCCGTCACGCAGCTGA 549 0.4736 MSSPEPSIPAADAKISSTTAIISDLSIDSVFTRALIIILIIFFLVRLWYMIIYHIRNHDCNHNHYVHNIVPDPTINPNNQQHEGNIQNDAIVAVNFDVAINSYPSFMYSAKINAAAGDNDNDNMTCPICICEYVESEMMRMMPQCGHYFHLNCLDEWLTINWSCPVCRDSPSMPQVVAPSRS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1060 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 173 IPR013083 -
Dere12g1060 182 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Dere12g1060 182 SUPERFAMILY RING/U-box 120 173 - -
Dere12g1060 182 PANTHER RING-H2 FINGER PROTEIN ATL67 5 178 IPR044289 GO:0016567|GO:0016740
Dere12g1060 182 SMART ring_2 126 167 IPR001841 -
Dere12g1060 182 Pfam Ring finger domain 125 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1060 Dere-ChrDere12 20461157 20461705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1060 36 168 Rapid Response to Elicitors AT3G05200 27.068 1.75e-18 80.1